Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12030 and PS417_12035 overlap by 44 nucleotides PS417_12035 and PS417_12040 are separated by 3 nucleotides PS417_12040 and PS417_12045 are separated by 56 nucleotides
PS417_12030: PS417_12030 - LysR family transcriptional regulator, at 2,613,658 to 2,614,554
_12030
PS417_12035: PS417_12035 - dihydroxyacetone kinase, at 2,614,511 to 2,615,158
_12035
PS417_12040: PS417_12040 - dihydroxyacetone kinase, at 2,615,162 to 2,616,163
_12040
PS417_12045: PS417_12045 - iditol 2-dehydrogenase, at 2,616,220 to 2,617,335
_12045
Position (kb)
2615
2616
2617 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2614.905 kb on + strand, within PS417_12035 at 2615.079 kb on + strand, within PS417_12035 at 2615.079 kb on + strand, within PS417_12035 at 2615.215 kb on + strand at 2615.215 kb on + strand at 2615.215 kb on + strand at 2615.215 kb on + strand at 2615.216 kb on - strand at 2615.216 kb on - strand at 2615.278 kb on - strand, within PS417_12040 at 2615.278 kb on - strand at 2615.278 kb on - strand, within PS417_12040 at 2615.278 kb on - strand, within PS417_12040 at 2615.289 kb on + strand, within PS417_12040 at 2615.289 kb on + strand, within PS417_12040 at 2615.290 kb on - strand, within PS417_12040 at 2615.290 kb on - strand at 2615.290 kb on - strand, within PS417_12040 at 2615.290 kb on - strand, within PS417_12040 at 2615.290 kb on - strand, within PS417_12040 at 2615.353 kb on - strand, within PS417_12040 at 2615.353 kb on - strand, within PS417_12040 at 2615.353 kb on - strand, within PS417_12040 at 2615.486 kb on + strand, within PS417_12040 at 2615.516 kb on + strand at 2615.658 kb on + strand, within PS417_12040 at 2615.844 kb on + strand, within PS417_12040 at 2615.845 kb on - strand, within PS417_12040 at 2615.853 kb on + strand, within PS417_12040 at 2615.973 kb on + strand, within PS417_12040 at 2616.249 kb on + strand at 2616.371 kb on + strand, within PS417_12045 at 2616.371 kb on + strand, within PS417_12045 at 2616.372 kb on - strand, within PS417_12045 at 2616.544 kb on - strand, within PS417_12045 at 2616.881 kb on + strand, within PS417_12045 at 2616.881 kb on + strand, within PS417_12045 at 2616.881 kb on + strand, within PS417_12045
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 2,614,905 + PS417_12035 0.61 +0.2 2,615,079 + PS417_12035 0.88 +0.4 2,615,079 + PS417_12035 0.88 -0.5 2,615,215 + -0.4 2,615,215 + +0.8 2,615,215 + +0.7 2,615,215 + +0.2 2,615,216 - -0.4 2,615,216 - -0.2 2,615,278 - PS417_12040 0.12 +0.6 2,615,278 - +1.6 2,615,278 - PS417_12040 0.12 +0.1 2,615,278 - PS417_12040 0.12 +0.3 2,615,289 + PS417_12040 0.13 -0.2 2,615,289 + PS417_12040 0.13 +1.0 2,615,290 - PS417_12040 0.13 +2.2 2,615,290 - +3.6 2,615,290 - PS417_12040 0.13 +0.1 2,615,290 - PS417_12040 0.13 +1.9 2,615,290 - PS417_12040 0.13 +0.8 2,615,353 - PS417_12040 0.19 -0.9 2,615,353 - PS417_12040 0.19 +0.3 2,615,353 - PS417_12040 0.19 +0.3 2,615,486 + PS417_12040 0.32 +0.2 2,615,516 + +1.6 2,615,658 + PS417_12040 0.50 +0.7 2,615,844 + PS417_12040 0.68 +0.2 2,615,845 - PS417_12040 0.68 +3.2 2,615,853 + PS417_12040 0.69 -0.0 2,615,973 + PS417_12040 0.81 +1.3 2,616,249 + +0.3 2,616,371 + PS417_12045 0.14 +0.4 2,616,371 + PS417_12045 0.14 -0.1 2,616,372 - PS417_12045 0.14 -0.3 2,616,544 - PS417_12045 0.29 +0.1 2,616,881 + PS417_12045 0.59 -0.1 2,616,881 + PS417_12045 0.59 +0.1 2,616,881 + PS417_12045 0.59 +0.8
Or see this region's nucleotide sequence