Experiment: Phosphomycin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10910 and PS417_10915 overlap by 4 nucleotides PS417_10915 and PS417_10920 are separated by 146 nucleotides
PS417_10910: PS417_10910 - FAD-dependent oxidoreductase, at 2,332,812 to 2,333,945
_10910
PS417_10915: PS417_10915 - ornithine cyclodeaminase, at 2,333,942 to 2,334,886
_10915
PS417_10920: PS417_10920 - LysR family transcriptional regulator, at 2,335,033 to 2,335,974
_10920
Position (kb)
2333
2334
2335 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2333.092 kb on + strand, within PS417_10910 at 2333.093 kb on - strand, within PS417_10910 at 2333.198 kb on - strand, within PS417_10910 at 2333.394 kb on + strand, within PS417_10910 at 2333.395 kb on - strand, within PS417_10910 at 2333.533 kb on + strand, within PS417_10910 at 2333.945 kb on + strand at 2333.945 kb on + strand at 2333.946 kb on - strand at 2333.946 kb on - strand at 2334.096 kb on + strand at 2334.096 kb on + strand, within PS417_10915 at 2334.097 kb on - strand, within PS417_10915 at 2334.286 kb on + strand, within PS417_10915 at 2334.450 kb on + strand, within PS417_10915 at 2334.451 kb on - strand, within PS417_10915 at 2334.451 kb on - strand at 2334.451 kb on - strand, within PS417_10915 at 2334.585 kb on - strand, within PS417_10915 at 2334.662 kb on - strand, within PS417_10915 at 2334.663 kb on + strand, within PS417_10915 at 2334.663 kb on + strand, within PS417_10915 at 2334.714 kb on + strand, within PS417_10915 at 2334.714 kb on + strand, within PS417_10915 at 2334.715 kb on - strand, within PS417_10915 at 2334.815 kb on - strand at 2335.122 kb on - strand at 2335.588 kb on + strand, within PS417_10920 at 2335.789 kb on + strand, within PS417_10920 at 2335.801 kb on - strand, within PS417_10920
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.003 mg/ml remove 2,333,092 + PS417_10910 0.25 -0.8 2,333,093 - PS417_10910 0.25 +0.9 2,333,198 - PS417_10910 0.34 -1.3 2,333,394 + PS417_10910 0.51 +0.4 2,333,395 - PS417_10910 0.51 -0.1 2,333,533 + PS417_10910 0.64 -0.2 2,333,945 + +1.1 2,333,945 + +0.4 2,333,946 - -0.9 2,333,946 - +0.8 2,334,096 + +1.6 2,334,096 + PS417_10915 0.16 -1.2 2,334,097 - PS417_10915 0.16 -0.1 2,334,286 + PS417_10915 0.36 -1.3 2,334,450 + PS417_10915 0.54 -0.2 2,334,451 - PS417_10915 0.54 -0.8 2,334,451 - +1.6 2,334,451 - PS417_10915 0.54 -1.3 2,334,585 - PS417_10915 0.68 -1.2 2,334,662 - PS417_10915 0.76 +0.6 2,334,663 + PS417_10915 0.76 +0.0 2,334,663 + PS417_10915 0.76 +0.1 2,334,714 + PS417_10915 0.82 +0.1 2,334,714 + PS417_10915 0.82 -0.3 2,334,715 - PS417_10915 0.82 -0.5 2,334,815 - +0.3 2,335,122 - +3.2 2,335,588 + PS417_10920 0.59 -1.1 2,335,789 + PS417_10920 0.80 +0.0 2,335,801 - PS417_10920 0.82 +0.3
Or see this region's nucleotide sequence