Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21455 and CA264_21460 are separated by 74 nucleotides CA264_21460 and CA264_21465 are separated by 148 nucleotides CA264_21465 and CA264_21470 are separated by 110 nucleotides
CA264_21455: CA264_21455 - hypothetical protein, at 157,551 to 158,864
_21455
CA264_21460: CA264_21460 - hypothetical protein, at 158,939 to 160,138
_21460
CA264_21465: CA264_21465 - hypothetical protein, at 160,287 to 160,754
_21465
CA264_21470: CA264_21470 - hypothetical protein, at 160,865 to 161,497
_21470
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.940 kb on - strand, within CA264_21455 at 157.947 kb on - strand, within CA264_21455 at 158.027 kb on - strand, within CA264_21455 at 158.029 kb on - strand, within CA264_21455 at 158.151 kb on - strand, within CA264_21455 at 158.348 kb on - strand, within CA264_21455 at 158.362 kb on - strand, within CA264_21455 at 158.362 kb on - strand, within CA264_21455 at 159.039 kb on - strand at 159.039 kb on - strand at 159.041 kb on - strand at 159.041 kb on - strand at 159.050 kb on - strand at 159.227 kb on - strand, within CA264_21460 at 159.233 kb on - strand, within CA264_21460 at 159.239 kb on - strand, within CA264_21460 at 160.021 kb on - strand at 160.021 kb on - strand at 160.063 kb on - strand at 160.273 kb on - strand at 160.273 kb on - strand at 160.306 kb on - strand at 160.308 kb on - strand at 160.367 kb on - strand, within CA264_21465 at 160.503 kb on - strand, within CA264_21465 at 160.619 kb on - strand, within CA264_21465 at 160.709 kb on - strand at 160.908 kb on + strand at 160.965 kb on + strand, within CA264_21470 at 160.966 kb on - strand, within CA264_21470 at 161.085 kb on + strand, within CA264_21470 at 161.086 kb on - strand, within CA264_21470 at 161.086 kb on - strand, within CA264_21470 at 161.086 kb on - strand, within CA264_21470 at 161.093 kb on + strand, within CA264_21470 at 161.093 kb on + strand, within CA264_21470
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 157,940 - CA264_21455 0.30 +1.0 157,947 - CA264_21455 0.30 -0.8 158,027 - CA264_21455 0.36 +0.0 158,029 - CA264_21455 0.36 +0.2 158,151 - CA264_21455 0.46 -0.6 158,348 - CA264_21455 0.61 +1.0 158,362 - CA264_21455 0.62 +0.6 158,362 - CA264_21455 0.62 -0.2 159,039 - +0.5 159,039 - -0.8 159,041 - +0.0 159,041 - +0.4 159,050 - -1.0 159,227 - CA264_21460 0.24 -0.2 159,233 - CA264_21460 0.24 -0.5 159,239 - CA264_21460 0.25 +1.4 160,021 - +0.0 160,021 - -1.0 160,063 - -0.6 160,273 - +0.0 160,273 - -0.3 160,306 - -0.3 160,308 - -0.7 160,367 - CA264_21465 0.17 -0.4 160,503 - CA264_21465 0.46 -1.7 160,619 - CA264_21465 0.71 -0.6 160,709 - -1.6 160,908 + -0.7 160,965 + CA264_21470 0.16 -1.0 160,966 - CA264_21470 0.16 -1.8 161,085 + CA264_21470 0.35 -0.4 161,086 - CA264_21470 0.35 -0.2 161,086 - CA264_21470 0.35 +2.6 161,086 - CA264_21470 0.35 +0.0 161,093 + CA264_21470 0.36 -0.9 161,093 + CA264_21470 0.36 -0.4
Or see this region's nucleotide sequence