Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21055 and CA264_21060 are separated by 20 nucleotides CA264_21060 and CA264_21065 are separated by 138 nucleotides CA264_21065 and CA264_21070 are separated by 39 nucleotides
CA264_21055: CA264_21055 - CusA/CzcA family heavy metal efflux RND transporter, at 71,522 to 75,931
_21055
CA264_21060: CA264_21060 - hypothetical protein, at 75,952 to 77,211
_21060
CA264_21065: CA264_21065 - transcriptional regulator, at 77,350 to 77,685
_21065
CA264_21070: CA264_21070 - transcriptional repressor, at 77,725 to 78,138
_21070
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 74.991 kb on + strand, within CA264_21055 at 74.998 kb on - strand, within CA264_21055 at 75.097 kb on + strand, within CA264_21055 at 75.097 kb on + strand, within CA264_21055 at 75.100 kb on - strand, within CA264_21055 at 75.117 kb on - strand at 75.135 kb on - strand, within CA264_21055 at 75.227 kb on + strand, within CA264_21055 at 75.228 kb on - strand, within CA264_21055 at 75.264 kb on + strand, within CA264_21055 at 75.265 kb on - strand, within CA264_21055 at 75.286 kb on + strand, within CA264_21055 at 75.286 kb on + strand, within CA264_21055 at 75.290 kb on + strand, within CA264_21055 at 75.291 kb on - strand, within CA264_21055 at 75.291 kb on - strand, within CA264_21055 at 75.393 kb on + strand, within CA264_21055 at 75.428 kb on + strand, within CA264_21055 at 75.509 kb on + strand at 75.545 kb on + strand at 75.677 kb on + strand at 75.713 kb on - strand at 75.725 kb on + strand at 75.726 kb on - strand at 75.726 kb on - strand at 75.729 kb on - strand at 75.806 kb on + strand at 75.841 kb on - strand at 75.906 kb on - strand at 75.938 kb on + strand at 75.978 kb on - strand at 76.084 kb on - strand, within CA264_21060 at 76.116 kb on + strand, within CA264_21060 at 76.166 kb on + strand, within CA264_21060 at 76.166 kb on + strand, within CA264_21060 at 76.166 kb on + strand, within CA264_21060 at 76.173 kb on - strand, within CA264_21060 at 76.254 kb on + strand, within CA264_21060 at 76.376 kb on - strand, within CA264_21060 at 76.376 kb on - strand, within CA264_21060 at 76.396 kb on + strand, within CA264_21060 at 76.396 kb on + strand, within CA264_21060 at 76.396 kb on + strand, within CA264_21060 at 76.396 kb on + strand, within CA264_21060 at 76.449 kb on + strand, within CA264_21060 at 76.574 kb on - strand, within CA264_21060 at 76.610 kb on + strand, within CA264_21060 at 76.611 kb on - strand, within CA264_21060 at 76.698 kb on + strand, within CA264_21060 at 76.723 kb on - strand, within CA264_21060 at 76.750 kb on + strand, within CA264_21060 at 76.751 kb on - strand, within CA264_21060 at 76.752 kb on + strand, within CA264_21060 at 76.753 kb on - strand, within CA264_21060 at 76.753 kb on - strand, within CA264_21060 at 76.763 kb on + strand, within CA264_21060 at 76.763 kb on + strand, within CA264_21060 at 76.763 kb on + strand, within CA264_21060 at 76.764 kb on - strand, within CA264_21060 at 76.765 kb on + strand, within CA264_21060 at 76.765 kb on + strand, within CA264_21060 at 76.766 kb on - strand, within CA264_21060 at 76.766 kb on - strand, within CA264_21060 at 76.766 kb on - strand, within CA264_21060 at 76.766 kb on - strand, within CA264_21060 at 76.767 kb on + strand, within CA264_21060 at 76.767 kb on + strand, within CA264_21060 at 76.767 kb on + strand, within CA264_21060 at 76.767 kb on + strand, within CA264_21060 at 76.768 kb on - strand, within CA264_21060 at 76.768 kb on - strand, within CA264_21060 at 76.831 kb on - strand, within CA264_21060 at 76.831 kb on - strand, within CA264_21060 at 76.831 kb on - strand, within CA264_21060 at 76.854 kb on + strand, within CA264_21060 at 76.854 kb on + strand, within CA264_21060 at 76.855 kb on - strand, within CA264_21060 at 76.858 kb on + strand, within CA264_21060 at 76.858 kb on + strand, within CA264_21060 at 76.859 kb on - strand, within CA264_21060 at 76.874 kb on + strand, within CA264_21060 at 76.874 kb on + strand, within CA264_21060 at 76.875 kb on - strand, within CA264_21060 at 76.884 kb on + strand, within CA264_21060 at 77.076 kb on - strand, within CA264_21060 at 77.076 kb on - strand, within CA264_21060 at 77.088 kb on + strand at 77.108 kb on + strand at 77.108 kb on + strand at 77.109 kb on - strand at 77.109 kb on - strand at 77.133 kb on + strand at 77.149 kb on + strand at 77.161 kb on + strand at 77.162 kb on - strand at 77.162 kb on - strand at 77.169 kb on + strand at 77.216 kb on + strand at 77.216 kb on + strand at 77.302 kb on - strand at 77.326 kb on - strand at 77.327 kb on + strand at 77.370 kb on + strand at 77.397 kb on - strand, within CA264_21065 at 77.573 kb on + strand, within CA264_21065 at 77.573 kb on + strand, within CA264_21065 at 77.621 kb on - strand, within CA264_21065 at 77.621 kb on - strand, within CA264_21065 at 77.709 kb on + strand at 77.717 kb on + strand at 77.718 kb on - strand at 77.826 kb on + strand, within CA264_21070 at 77.876 kb on + strand, within CA264_21070 at 77.877 kb on - strand, within CA264_21070 at 77.877 kb on - strand, within CA264_21070 at 77.877 kb on - strand, within CA264_21070 at 77.916 kb on - strand, within CA264_21070 at 77.916 kb on - strand, within CA264_21070 at 77.916 kb on - strand, within CA264_21070 at 77.950 kb on + strand, within CA264_21070 at 77.951 kb on - strand, within CA264_21070 at 77.951 kb on - strand, within CA264_21070 at 77.951 kb on - strand, within CA264_21070 at 78.060 kb on + strand, within CA264_21070 at 78.061 kb on - strand, within CA264_21070 at 78.061 kb on - strand, within CA264_21070 at 78.062 kb on + strand, within CA264_21070 at 78.063 kb on - strand, within CA264_21070 at 78.063 kb on - strand, within CA264_21070 at 78.095 kb on + strand, within CA264_21070 at 78.095 kb on + strand, within CA264_21070 at 78.136 kb on + strand at 78.137 kb on - strand at 78.137 kb on - strand at 78.145 kb on - strand at 78.181 kb on - strand at 78.191 kb on + strand at 78.191 kb on + strand at 78.191 kb on + strand at 78.191 kb on + strand at 78.192 kb on - strand at 78.192 kb on - strand at 78.192 kb on - strand at 78.192 kb on - strand at 78.192 kb on - strand at 78.192 kb on - strand at 78.194 kb on - strand at 78.203 kb on + strand at 78.203 kb on + strand at 78.204 kb on - strand at 78.204 kb on - strand at 78.204 kb on - strand at 78.206 kb on - strand at 78.207 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 74,991 + CA264_21055 0.79 +0.2 74,998 - CA264_21055 0.79 -2.6 75,097 + CA264_21055 0.81 -0.4 75,097 + CA264_21055 0.81 -0.3 75,100 - CA264_21055 0.81 -0.2 75,117 - +1.0 75,135 - CA264_21055 0.82 +0.1 75,227 + CA264_21055 0.84 -1.1 75,228 - CA264_21055 0.84 +0.2 75,264 + CA264_21055 0.85 -0.2 75,265 - CA264_21055 0.85 +0.8 75,286 + CA264_21055 0.85 +0.5 75,286 + CA264_21055 0.85 -2.3 75,290 + CA264_21055 0.85 +1.0 75,291 - CA264_21055 0.85 -0.6 75,291 - CA264_21055 0.85 -0.0 75,393 + CA264_21055 0.88 -0.7 75,428 + CA264_21055 0.89 +0.0 75,509 + -1.2 75,545 + -0.6 75,677 + -1.6 75,713 - +0.5 75,725 + -0.6 75,726 - +1.3 75,726 - -1.3 75,729 - -0.9 75,806 + -0.6 75,841 - +0.0 75,906 - -0.2 75,938 + +0.3 75,978 - +0.3 76,084 - CA264_21060 0.10 +1.0 76,116 + CA264_21060 0.13 +1.0 76,166 + CA264_21060 0.17 -0.3 76,166 + CA264_21060 0.17 +0.2 76,166 + CA264_21060 0.17 +0.5 76,173 - CA264_21060 0.18 +1.0 76,254 + CA264_21060 0.24 -2.0 76,376 - CA264_21060 0.34 -2.6 76,376 - CA264_21060 0.34 -0.4 76,396 + CA264_21060 0.35 -0.8 76,396 + CA264_21060 0.35 +0.4 76,396 + CA264_21060 0.35 +0.0 76,396 + CA264_21060 0.35 +1.6 76,449 + CA264_21060 0.39 -0.5 76,574 - CA264_21060 0.49 -0.1 76,610 + CA264_21060 0.52 -0.6 76,611 - CA264_21060 0.52 +2.0 76,698 + CA264_21060 0.59 -1.6 76,723 - CA264_21060 0.61 +3.0 76,750 + CA264_21060 0.63 +0.2 76,751 - CA264_21060 0.63 -1.7 76,752 + CA264_21060 0.63 +0.2 76,753 - CA264_21060 0.64 +1.1 76,753 - CA264_21060 0.64 +0.5 76,763 + CA264_21060 0.64 +0.0 76,763 + CA264_21060 0.64 +0.4 76,763 + CA264_21060 0.64 +0.6 76,764 - CA264_21060 0.64 +3.0 76,765 + CA264_21060 0.65 +1.0 76,765 + CA264_21060 0.65 +0.9 76,766 - CA264_21060 0.65 -1.1 76,766 - CA264_21060 0.65 +0.6 76,766 - CA264_21060 0.65 -0.2 76,766 - CA264_21060 0.65 -1.0 76,767 + CA264_21060 0.65 +0.4 76,767 + CA264_21060 0.65 +0.9 76,767 + CA264_21060 0.65 +1.0 76,767 + CA264_21060 0.65 +1.2 76,768 - CA264_21060 0.65 +0.7 76,768 - CA264_21060 0.65 +0.0 76,831 - CA264_21060 0.70 -0.3 76,831 - CA264_21060 0.70 +1.0 76,831 - CA264_21060 0.70 +0.1 76,854 + CA264_21060 0.72 -0.8 76,854 + CA264_21060 0.72 +0.1 76,855 - CA264_21060 0.72 +0.4 76,858 + CA264_21060 0.72 +1.4 76,858 + CA264_21060 0.72 -1.8 76,859 - CA264_21060 0.72 -0.3 76,874 + CA264_21060 0.73 +0.6 76,874 + CA264_21060 0.73 +0.0 76,875 - CA264_21060 0.73 +1.0 76,884 + CA264_21060 0.74 +0.5 77,076 - CA264_21060 0.89 +1.5 77,076 - CA264_21060 0.89 -1.0 77,088 + +1.0 77,108 + +0.5 77,108 + +0.3 77,109 - +0.4 77,109 - +1.9 77,133 + +2.6 77,149 + +1.2 77,161 + +2.0 77,162 - -2.0 77,162 - +0.0 77,169 + -1.3 77,216 + +1.0 77,216 + +1.0 77,302 - -0.1 77,326 - -0.6 77,327 + -1.0 77,370 + -1.0 77,397 - CA264_21065 0.14 +0.4 77,573 + CA264_21065 0.66 +2.6 77,573 + CA264_21065 0.66 +1.3 77,621 - CA264_21065 0.81 +1.2 77,621 - CA264_21065 0.81 -0.9 77,709 + -0.6 77,717 + -0.1 77,718 - +0.8 77,826 + CA264_21070 0.24 -0.1 77,876 + CA264_21070 0.36 -1.4 77,877 - CA264_21070 0.37 +1.0 77,877 - CA264_21070 0.37 +1.6 77,877 - CA264_21070 0.37 +2.0 77,916 - CA264_21070 0.46 -0.1 77,916 - CA264_21070 0.46 -0.2 77,916 - CA264_21070 0.46 -0.9 77,950 + CA264_21070 0.54 +0.6 77,951 - CA264_21070 0.55 +0.5 77,951 - CA264_21070 0.55 +2.0 77,951 - CA264_21070 0.55 +0.3 78,060 + CA264_21070 0.81 +0.5 78,061 - CA264_21070 0.81 -1.3 78,061 - CA264_21070 0.81 +1.0 78,062 + CA264_21070 0.81 -0.6 78,063 - CA264_21070 0.82 -0.3 78,063 - CA264_21070 0.82 -1.3 78,095 + CA264_21070 0.89 -0.6 78,095 + CA264_21070 0.89 +0.0 78,136 + -0.3 78,137 - +1.2 78,137 - -0.8 78,145 - +0.4 78,181 - -0.6 78,191 + +1.0 78,191 + +0.2 78,191 + -0.3 78,191 + +0.4 78,192 - +0.2 78,192 - +0.2 78,192 - -0.6 78,192 - -0.3 78,192 - +0.6 78,192 - -0.2 78,194 - -0.5 78,203 + -1.6 78,203 + +0.5 78,204 - -0.1 78,204 - -0.6 78,204 - +0.7 78,206 - -0.3 78,207 + +0.5
Or see this region's nucleotide sequence