Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19225 and CA264_19230 overlap by 4 nucleotides CA264_19230 and CA264_19235 are separated by 141 nucleotides CA264_19235 and CA264_19240 are separated by 52 nucleotides CA264_19240 and CA264_19245 are separated by 80 nucleotides
CA264_19225: CA264_19225 - guanylate kinase, at 4,465,315 to 4,465,899
_19225
CA264_19230: CA264_19230 - nicotinate-nicotinamide nucleotide adenylyltransferase, at 4,465,896 to 4,466,468
_19230
CA264_19235: CA264_19235 - ribosome-recycling factor, at 4,466,610 to 4,467,173
_19235
CA264_19240: CA264_19240 - UMP kinase, at 4,467,226 to 4,468,002
_19240
CA264_19245: CA264_19245 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 4,468,083 to 4,468,583
_19245
Position (kb)
4466
4467
4468 Strain fitness (log2 ratio)
-2
-1
0
1 at 4466.493 kb on + strand at 4466.515 kb on + strand at 4466.516 kb on - strand at 4466.516 kb on - strand at 4466.521 kb on - strand at 4466.579 kb on + strand at 4466.579 kb on + strand at 4466.603 kb on + strand at 4466.611 kb on + strand at 4467.185 kb on + strand at 4467.186 kb on - strand at 4468.081 kb on - strand at 4468.081 kb on - strand at 4468.081 kb on - strand at 4468.081 kb on - strand at 4468.081 kb on - strand at 4468.081 kb on - strand at 4468.173 kb on - strand, within CA264_19245 at 4468.173 kb on - strand, within CA264_19245
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 4,466,493 + -0.1 4,466,515 + +0.9 4,466,516 - +0.1 4,466,516 - +0.1 4,466,521 - +0.7 4,466,579 + -0.5 4,466,579 + +0.8 4,466,603 + -0.9 4,466,611 + -2.1 4,467,185 + +0.4 4,467,186 - +1.0 4,468,081 - +0.3 4,468,081 - -1.0 4,468,081 - -0.2 4,468,081 - +0.8 4,468,081 - +0.6 4,468,081 - +1.3 4,468,173 - CA264_19245 0.18 -0.6 4,468,173 - CA264_19245 0.18 +0.1
Or see this region's nucleotide sequence