Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14835

Experiment: marine_broth_2216 with nitrite 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 with nitrite 20 mM
3,483,115	+		CA264_14830	0.72	-0.3
3,483,118	+		CA264_14830	0.72	+1.6
3,483,119	-		CA264_14830	0.72	+0.1
3,483,123	+		CA264_14830	0.72	+0.3
3,483,124	-		CA264_14830	0.72	-1.0
3,483,269	+		CA264_14830	0.77	-0.9
3,483,269	+		CA264_14830	0.77	-2.0
3,483,269	+		CA264_14830	0.77	-2.2
3,483,270	-		CA264_14830	0.77	-1.5
3,483,270	-		CA264_14830	0.77	-0.3
3,483,284	-		CA264_14830	0.77	-0.2
3,483,291	-		CA264_14830	0.78	-0.8
3,483,321	+		CA264_14830	0.79	-0.7
3,483,321	+		CA264_14830	0.79	+0.3
3,483,321	+		CA264_14830	0.79	-1.9
3,483,321	+		CA264_14830	0.79	-2.6
3,483,322	-		CA264_14830	0.79	-0.2
3,483,327	-		CA264_14830	0.79	+0.3
3,483,327	-		CA264_14830	0.79	-0.4
3,483,354	+		CA264_14830	0.80	-0.3
3,483,403	+		CA264_14830	0.81	-0.6
3,483,517	+		CA264_14830	0.85	+0.1
3,483,522	+		CA264_14830	0.85	-0.8
3,483,522	+		CA264_14830	0.85	+0.0
3,483,522	+		CA264_14830	0.85	-0.5
3,483,523	-		CA264_14830	0.85	-0.3
3,483,523	-		CA264_14830	0.85	-1.2
3,483,524	+		CA264_14830	0.85	-0.1
3,483,525	-		CA264_14830	0.85	+1.7
3,483,525	-		CA264_14830	0.85	-1.5
3,483,554	+		CA264_14830	0.86	+0.3
3,483,554	+		CA264_14830	0.86	-0.1
3,483,564	+		CA264_14830	0.86	+2.6
3,483,584	-		CA264_14830	0.87	-0.6
3,483,604	-		CA264_14830	0.87	-0.2
3,483,626	+		CA264_14830	0.88	+0.2
3,483,651	-		CA264_14830	0.89	-0.3
3,483,651	-		CA264_14830	0.89	-1.0
3,483,696	+				-0.6
3,483,696	+				-2.3
3,483,702	-				-2.5
3,483,753	-				-0.4
3,483,796	+				-0.9
3,483,797	-				-0.0
3,483,803	-				+0.7
3,483,877	+				-0.6
3,483,878	-				-1.3
3,483,893	-				-1.2
3,483,936	-				-0.2
3,483,952	+				+1.6
3,483,956	+				+0.0
3,483,957	-				-0.7
3,483,980	+				-2.0
3,484,020	-				-1.2
3,484,119	+				-0.6
3,484,123	+				-0.6
3,484,123	+				+0.1
3,484,123	+				+1.0
3,484,124	-				+1.5
3,484,124	-				-0.1
3,484,188	-				-1.4
3,484,188	-				-0.7
3,484,205	+				-0.6
3,484,206	-				+0.2
3,484,233	-		CA264_14835	0.11	+0.7
3,484,305	+		CA264_14835	0.18	-0.0
3,484,313	+		CA264_14835	0.18	+0.9
3,484,391	-		CA264_14835	0.26	-1.3
3,484,447	-		CA264_14835	0.31	+0.0
3,484,506	+		CA264_14835	0.36	-0.1
3,484,541	-		CA264_14835	0.39	-1.0
3,484,541	-		CA264_14835	0.39	-0.6
3,484,629	+		CA264_14835	0.48	+0.0
3,484,684	-		CA264_14835	0.53	+0.2
3,484,695	+		CA264_14835	0.54	+0.1
3,484,718	-		CA264_14835	0.56	+0.4
3,484,718	-		CA264_14835	0.56	-1.3
3,484,720	-		CA264_14835	0.56	-0.7
3,484,720	-		CA264_14835	0.56	+0.3
3,484,720	-		CA264_14835	0.56	+1.6
3,484,720	-		CA264_14835	0.56	-0.1
3,484,750	+		CA264_14835	0.59	-0.2
3,484,750	+		CA264_14835	0.59	-0.2
3,484,750	+		CA264_14835	0.59	+0.0
3,484,750	+		CA264_14835	0.59	+0.2
3,484,750	+		CA264_14835	0.59	+0.2
3,484,750	+		CA264_14835	0.59	+0.1
3,484,750	+		CA264_14835	0.59	+0.4
3,484,751	-		CA264_14835	0.59	-0.8
3,484,751	-		CA264_14835	0.59	+1.0
3,484,751	-		CA264_14835	0.59	-1.0
3,484,751	-		CA264_14835	0.59	-0.7
3,484,751	-		CA264_14835	0.59	-1.6
3,484,751	-		CA264_14835	0.59	-0.4
3,484,751	-		CA264_14835	0.59	-0.5
3,484,752	+		CA264_14835	0.59	+0.2
3,484,752	+		CA264_14835	0.59	+0.4
3,484,752	+		CA264_14835	0.59	+0.1
3,484,781	+		CA264_14835	0.62	+0.0
3,484,784	-		CA264_14835	0.62	-0.8
3,484,784	-		CA264_14835	0.62	+0.1
3,484,802	-		CA264_14835	0.64	+0.2
3,484,842	+		CA264_14835	0.67	+0.1
3,484,842	+		CA264_14835	0.67	+2.3
3,484,852	+		CA264_14835	0.68	+1.3
3,484,853	-		CA264_14835	0.68	+0.0
3,484,855	-		CA264_14835	0.69	-0.3
3,484,934	-		CA264_14835	0.76	+0.5
3,484,987	-		CA264_14835	0.81	+0.0
3,484,997	-		CA264_14835	0.82	-0.3
3,485,002	-		CA264_14835	0.82	-0.3
3,485,040	+		CA264_14835	0.86	-0.6
3,485,041	-		CA264_14835	0.86	-0.8
3,485,152	+				+0.7
3,485,153	-				+0.3
3,485,156	+				-0.6
3,485,156	+				+0.1
3,485,157	-				-0.5
3,485,180	+				-0.1
3,485,183	-				-1.1
3,485,195	+				+0.1
3,485,196	-				-0.6
3,485,221	+				-0.3
3,485,221	+				-0.0
3,485,222	-				-1.2
3,485,328	+				+0.3
3,485,328	+				-0.7
3,485,329	-				-0.1
3,485,332	-				+0.3
3,485,360	-				-1.6
3,485,360	-				-1.0
3,485,360	-				-0.5
3,485,360	-				-0.1
3,485,477	-		CA264_14840	0.16	-0.4
3,485,484	+		CA264_14840	0.16	-0.3
3,485,534	-		CA264_14840	0.19	-0.5
3,485,534	-		CA264_14840	0.19	-0.5
3,485,564	+		CA264_14840	0.21	+0.1
3,485,565	-		CA264_14840	0.21	+0.0
3,485,598	+		CA264_14840	0.23	-1.7
3,485,615	+		CA264_14840	0.24	+0.3
3,485,615	+		CA264_14840	0.24	+0.1
3,485,615	+		CA264_14840	0.24	+1.0
3,485,616	-		CA264_14840	0.24	+0.3
3,485,616	-		CA264_14840	0.24	+1.0
3,485,617	+		CA264_14840	0.24	+0.1
3,485,617	+		CA264_14840	0.24	-0.4
3,485,618	-		CA264_14840	0.24	+0.9
3,485,618	-		CA264_14840	0.24	+2.0
3,485,639	-		CA264_14840	0.25	+0.1
3,485,652	-		CA264_14840	0.26	-1.3
3,485,652	-		CA264_14840	0.26	-0.1
3,485,654	+		CA264_14840	0.26	-0.4
3,485,654	+		CA264_14840	0.26	-0.9
3,485,654	+		CA264_14840	0.26	+0.0
3,485,654	+		CA264_14840	0.26	-0.6
3,485,654	+		CA264_14840	0.26	-0.5
3,485,654	+		CA264_14840	0.26	-1.0
3,485,655	-		CA264_14840	0.26	+0.7
3,485,655	-		CA264_14840	0.26	-0.3
3,485,682	-		CA264_14840	0.28	-0.5
3,485,683	+		CA264_14840	0.28	+0.7
3,485,747	+		CA264_14840	0.32	+3.3
3,485,757	+		CA264_14840	0.32	-0.3
3,485,761	-		CA264_14840	0.32	-0.7
3,485,761	-		CA264_14840	0.32	+0.3
3,485,867	-		CA264_14840	0.39	+0.0
3,485,903	-		CA264_14840	0.41	+0.5
3,485,916	-		CA264_14840	0.41	-0.6
3,485,916	-		CA264_14840	0.41	+0.0
3,485,916	-		CA264_14840	0.41	-1.3
3,485,935	+		CA264_14840	0.42	-0.3
3,485,954	-		CA264_14840	0.44	-0.7
3,485,970	-		CA264_14840	0.45	-0.5
3,485,970	-		CA264_14840	0.45	+0.0
3,485,973	+		CA264_14840	0.45	-0.2
3,485,991	+		CA264_14840	0.46	-0.6
3,486,010	+		CA264_14840	0.47	+0.6
3,486,010	+		CA264_14840	0.47	-0.1
3,486,010	+		CA264_14840	0.47	+1.1
3,486,021	+		CA264_14840	0.47	-0.7
3,486,042	+		CA264_14840	0.49	+0.2
3,486,042	+		CA264_14840	0.49	-0.7
3,486,042	+		CA264_14840	0.49	-0.1
3,486,043	-		CA264_14840	0.49	+0.1
3,486,046	+		CA264_14840	0.49	-3.1
3,486,046	+		CA264_14840	0.49	+1.3
3,486,046	+		CA264_14840	0.49	+0.0
3,486,046	+		CA264_14840	0.49	-0.4
3,486,076	+		CA264_14840	0.51	-0.0
3,486,083	-		CA264_14840	0.51	-0.2
3,486,094	-		CA264_14840	0.52	-0.4
3,486,098	-		CA264_14840	0.52	+0.2
3,486,112	+		CA264_14840	0.53	+0.1
3,486,116	+		CA264_14840	0.53	-0.8
3,486,116	+		CA264_14840	0.53	+1.6
3,486,117	-		CA264_14840	0.53	+0.2
3,486,117	-		CA264_14840	0.53	-0.6
3,486,127	-		CA264_14840	0.54	-0.1
3,486,148	+		CA264_14840	0.55	+0.6
3,486,156	+		CA264_14840	0.55	+0.1
3,486,157	-		CA264_14840	0.55	-0.5