Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03775 and CA264_03780 are separated by 104 nucleotides CA264_03780 and CA264_03785 are separated by 114 nucleotides CA264_03785 and CA264_03790 are separated by 44 nucleotides
CA264_03775: CA264_03775 - hypothetical protein, at 885,150 to 886,034
_03775
CA264_03780: CA264_03780 - diacylglycerol kinase, at 886,139 to 887,020
_03780
CA264_03785: CA264_03785 - translation initiation factor, at 887,135 to 887,482
_03785
CA264_03790: CA264_03790 - hypothetical protein, at 887,527 to 887,961
_03790
Position (kb) 886
887
888 Strain fitness (log2 ratio) -1
0
1 at 885.140 kb on + strand at 885.167 kb on + strand at 885.196 kb on + strand at 885.309 kb on + strand, within CA264_03775 at 885.370 kb on + strand, within CA264_03775 at 885.681 kb on - strand, within CA264_03775 at 885.752 kb on - strand, within CA264_03775 at 885.752 kb on - strand, within CA264_03775 at 885.752 kb on - strand, within CA264_03775 at 885.755 kb on - strand, within CA264_03775 at 885.755 kb on - strand, within CA264_03775 at 885.755 kb on - strand, within CA264_03775 at 885.756 kb on + strand, within CA264_03775 at 885.756 kb on + strand, within CA264_03775 at 885.757 kb on - strand, within CA264_03775 at 885.757 kb on - strand, within CA264_03775 at 885.757 kb on - strand, within CA264_03775 at 885.757 kb on - strand, within CA264_03775 at 885.765 kb on - strand, within CA264_03775 at 885.829 kb on - strand, within CA264_03775 at 885.843 kb on + strand, within CA264_03775 at 885.843 kb on + strand, within CA264_03775 at 885.843 kb on + strand, within CA264_03775 at 885.844 kb on - strand, within CA264_03775 at 885.844 kb on - strand, within CA264_03775 at 885.844 kb on - strand, within CA264_03775 at 885.845 kb on + strand, within CA264_03775 at 885.845 kb on + strand, within CA264_03775 at 885.962 kb on - strand at 886.033 kb on - strand at 886.049 kb on + strand at 886.087 kb on - strand at 886.087 kb on - strand at 886.088 kb on + strand at 887.078 kb on + strand at 887.079 kb on - strand at 887.079 kb on - strand at 887.093 kb on + strand at 887.094 kb on - strand at 887.105 kb on + strand at 887.107 kb on + strand at 887.108 kb on - strand at 887.172 kb on + strand, within CA264_03785 at 887.198 kb on + strand, within CA264_03785 at 887.198 kb on + strand, within CA264_03785 at 887.199 kb on - strand, within CA264_03785 at 887.295 kb on + strand, within CA264_03785 at 887.431 kb on - strand, within CA264_03785 at 887.459 kb on - strand at 887.511 kb on + strand at 887.597 kb on - strand, within CA264_03790 at 887.635 kb on + strand, within CA264_03790 at 887.636 kb on - strand, within CA264_03790 at 887.708 kb on + strand, within CA264_03790 at 887.732 kb on + strand, within CA264_03790 at 887.824 kb on + strand, within CA264_03790 at 887.824 kb on + strand, within CA264_03790 at 887.904 kb on - strand, within CA264_03790 at 887.904 kb on - strand, within CA264_03790 at 887.918 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 885,140 + -0.8 885,167 + +1.6 885,196 + -0.3 885,309 + CA264_03775 0.18 +1.6 885,370 + CA264_03775 0.25 +0.2 885,681 - CA264_03775 0.60 -0.5 885,752 - CA264_03775 0.68 +1.0 885,752 - CA264_03775 0.68 +0.3 885,752 - CA264_03775 0.68 +1.0 885,755 - CA264_03775 0.68 -0.6 885,755 - CA264_03775 0.68 -0.0 885,755 - CA264_03775 0.68 +0.4 885,756 + CA264_03775 0.68 -0.5 885,756 + CA264_03775 0.68 +0.7 885,757 - CA264_03775 0.69 -0.3 885,757 - CA264_03775 0.69 -0.6 885,757 - CA264_03775 0.69 +0.1 885,757 - CA264_03775 0.69 -0.3 885,765 - CA264_03775 0.69 -0.7 885,829 - CA264_03775 0.77 -0.1 885,843 + CA264_03775 0.78 -0.3 885,843 + CA264_03775 0.78 +0.6 885,843 + CA264_03775 0.78 -1.0 885,844 - CA264_03775 0.78 +1.2 885,844 - CA264_03775 0.78 +0.2 885,844 - CA264_03775 0.78 -0.6 885,845 + CA264_03775 0.79 -0.0 885,845 + CA264_03775 0.79 -0.6 885,962 - +0.3 886,033 - +0.0 886,049 + -0.0 886,087 - +0.0 886,087 - -0.5 886,088 + +0.2 887,078 + +0.0 887,079 - +1.0 887,079 - +0.7 887,093 + -0.5 887,094 - +0.1 887,105 + +0.5 887,107 + -0.6 887,108 - +0.3 887,172 + CA264_03785 0.11 -1.2 887,198 + CA264_03785 0.18 +0.8 887,198 + CA264_03785 0.18 -0.3 887,199 - CA264_03785 0.18 +0.5 887,295 + CA264_03785 0.46 +0.5 887,431 - CA264_03785 0.85 +0.3 887,459 - +0.0 887,511 + +1.2 887,597 - CA264_03790 0.16 +0.5 887,635 + CA264_03790 0.25 +0.0 887,636 - CA264_03790 0.25 -0.6 887,708 + CA264_03790 0.42 -1.1 887,732 + CA264_03790 0.47 +0.3 887,824 + CA264_03790 0.68 -0.6 887,824 + CA264_03790 0.68 +0.4 887,904 - CA264_03790 0.87 +0.2 887,904 - CA264_03790 0.87 -0.6 887,918 + -0.3
Or see this region's nucleotide sequence