Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03320 and CA264_03325 are separated by 248 nucleotides CA264_03325 and CA264_03330 are separated by 147 nucleotides CA264_03330 and CA264_03335 are separated by 106 nucleotides
CA264_03320: CA264_03320 - hypothetical protein, at 778,991 to 780,139
_03320
CA264_03325: CA264_03325 - hypothetical protein, at 780,388 to 780,597
_03325
CA264_03330: CA264_03330 - peptide-methionine (R)-S-oxide reductase, at 780,745 to 781,200
_03330
CA264_03335: CA264_03335 - glyoxylate/hydroxypyruvate reductase A, at 781,307 to 782,236
_03335
Position (kb) 780
781 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 779.416 kb on + strand, within CA264_03320 at 779.512 kb on + strand, within CA264_03320 at 779.540 kb on - strand, within CA264_03320 at 779.540 kb on - strand, within CA264_03320 at 779.715 kb on - strand, within CA264_03320 at 779.860 kb on - strand, within CA264_03320 at 780.166 kb on + strand at 780.166 kb on + strand at 780.166 kb on + strand at 780.169 kb on + strand at 780.170 kb on - strand at 780.170 kb on - strand at 780.191 kb on - strand at 780.214 kb on - strand at 780.220 kb on + strand at 780.323 kb on + strand at 780.324 kb on - strand at 780.338 kb on + strand at 780.339 kb on - strand at 780.339 kb on - strand at 780.342 kb on + strand at 780.354 kb on - strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.364 kb on + strand at 780.364 kb on + strand at 780.365 kb on - strand at 780.365 kb on - strand at 780.365 kb on - strand at 780.372 kb on - strand at 780.377 kb on + strand at 780.377 kb on + strand at 780.377 kb on + strand at 780.378 kb on - strand at 780.379 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.387 kb on - strand at 780.472 kb on + strand, within CA264_03325 at 780.473 kb on - strand, within CA264_03325 at 780.566 kb on - strand, within CA264_03325 at 780.586 kb on + strand at 780.634 kb on - strand at 780.643 kb on - strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.648 kb on - strand at 780.648 kb on - strand at 780.648 kb on - strand at 780.657 kb on + strand at 780.657 kb on + strand at 780.658 kb on - strand at 780.658 kb on - strand at 780.668 kb on + strand at 780.668 kb on + strand at 780.677 kb on + strand at 780.685 kb on - strand at 780.700 kb on + strand at 780.702 kb on + strand at 780.702 kb on + strand at 780.702 kb on + strand at 780.713 kb on + strand at 780.713 kb on + strand at 780.714 kb on - strand at 780.792 kb on - strand, within CA264_03330 at 780.903 kb on - strand, within CA264_03330 at 781.040 kb on + strand, within CA264_03330 at 781.050 kb on + strand, within CA264_03330 at 781.163 kb on + strand at 781.177 kb on + strand at 781.269 kb on + strand at 781.304 kb on + strand at 781.304 kb on + strand at 781.304 kb on + strand at 781.305 kb on - strand at 781.305 kb on - strand at 781.317 kb on + strand at 781.318 kb on - strand at 781.318 kb on - strand at 781.318 kb on - strand at 781.318 kb on - strand at 781.320 kb on + strand at 781.321 kb on - strand at 781.323 kb on + strand at 781.324 kb on - strand at 781.327 kb on + strand at 781.328 kb on - strand at 781.472 kb on + strand, within CA264_03335 at 781.570 kb on - strand, within CA264_03335
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 779,416 + CA264_03320 0.37 +0.4 779,512 + CA264_03320 0.45 +3.2 779,540 - CA264_03320 0.48 +0.0 779,540 - CA264_03320 0.48 +0.6 779,715 - CA264_03320 0.63 -0.1 779,860 - CA264_03320 0.76 -0.3 780,166 + +1.1 780,166 + -0.4 780,166 + +0.4 780,169 + -1.0 780,170 - -1.6 780,170 - -2.4 780,191 - +0.9 780,214 - +4.0 780,220 + +0.0 780,323 + -1.0 780,324 - +1.0 780,338 + +2.2 780,339 - -0.1 780,339 - +1.2 780,342 + +0.1 780,354 - -0.2 780,358 + +0.5 780,358 + -0.2 780,358 + +0.6 780,358 + -0.8 780,358 + -0.7 780,362 + +0.3 780,362 + -0.3 780,362 + +1.0 780,362 + +0.9 780,363 - -0.4 780,363 - -0.2 780,363 - -0.7 780,363 - +0.3 780,364 + +3.3 780,364 + -0.6 780,365 - +0.6 780,365 - +1.0 780,365 - -1.4 780,372 - +0.0 780,377 + -0.2 780,377 + +0.0 780,377 + -0.5 780,378 - +0.3 780,379 + +0.4 780,384 + +0.6 780,384 + +0.6 780,384 + -0.1 780,384 + -1.0 780,387 - +2.6 780,472 + CA264_03325 0.40 +0.1 780,473 - CA264_03325 0.40 -1.1 780,566 - CA264_03325 0.85 -0.6 780,586 + +0.3 780,634 - -0.5 780,643 - -1.3 780,647 + +0.1 780,647 + -0.3 780,647 + -0.8 780,647 + -0.1 780,647 + -0.7 780,647 + -1.1 780,648 - +0.2 780,648 - -0.7 780,648 - -0.3 780,657 + -0.5 780,657 + +1.3 780,658 - +0.8 780,658 - +0.4 780,668 + +0.1 780,668 + +0.0 780,677 + +0.1 780,685 - +0.0 780,700 + +0.3 780,702 + -0.4 780,702 + +1.4 780,702 + +0.1 780,713 + +0.0 780,713 + +0.1 780,714 - +0.0 780,792 - CA264_03330 0.10 -0.2 780,903 - CA264_03330 0.35 -0.4 781,040 + CA264_03330 0.65 +0.0 781,050 + CA264_03330 0.67 +0.6 781,163 + +1.3 781,177 + +1.6 781,269 + -1.8 781,304 + +0.4 781,304 + +0.2 781,304 + +0.9 781,305 - -1.4 781,305 - -1.3 781,317 + +2.0 781,318 - -0.1 781,318 - -0.6 781,318 - -0.4 781,318 - -0.7 781,320 + -1.7 781,321 - -0.4 781,323 + +1.2 781,324 - -0.1 781,327 + -0.9 781,328 - -0.6 781,472 + CA264_03335 0.18 +0.1 781,570 - CA264_03335 0.28 -0.4
Or see this region's nucleotide sequence