Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03315 and CA264_03320 overlap by 4 nucleotides CA264_03320 and CA264_03325 are separated by 248 nucleotides CA264_03325 and CA264_03330 are separated by 147 nucleotides
CA264_03315: CA264_03315 - hypothetical protein, at 777,696 to 778,994
_03315
CA264_03320: CA264_03320 - hypothetical protein, at 778,991 to 780,139
_03320
CA264_03325: CA264_03325 - hypothetical protein, at 780,388 to 780,597
_03325
CA264_03330: CA264_03330 - peptide-methionine (R)-S-oxide reductase, at 780,745 to 781,200
_03330
Position (kb) 778
779
780
781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 778.065 kb on + strand, within CA264_03315 at 778.065 kb on + strand, within CA264_03315 at 778.066 kb on - strand, within CA264_03315 at 778.066 kb on - strand, within CA264_03315 at 778.066 kb on - strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.067 kb on + strand, within CA264_03315 at 778.068 kb on - strand, within CA264_03315 at 778.068 kb on - strand, within CA264_03315 at 778.111 kb on + strand, within CA264_03315 at 778.270 kb on + strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.271 kb on - strand, within CA264_03315 at 778.334 kb on + strand, within CA264_03315 at 778.342 kb on - strand, within CA264_03315 at 778.363 kb on - strand, within CA264_03315 at 778.419 kb on + strand, within CA264_03315 at 778.419 kb on + strand at 778.435 kb on - strand, within CA264_03315 at 778.438 kb on - strand, within CA264_03315 at 778.489 kb on - strand, within CA264_03315 at 778.565 kb on + strand, within CA264_03315 at 778.570 kb on + strand, within CA264_03315 at 778.571 kb on - strand, within CA264_03315 at 778.602 kb on + strand, within CA264_03315 at 778.602 kb on + strand, within CA264_03315 at 778.602 kb on + strand, within CA264_03315 at 778.603 kb on - strand, within CA264_03315 at 778.603 kb on - strand, within CA264_03315 at 778.638 kb on - strand, within CA264_03315 at 778.641 kb on + strand, within CA264_03315 at 778.642 kb on - strand, within CA264_03315 at 778.642 kb on - strand, within CA264_03315 at 778.668 kb on + strand, within CA264_03315 at 778.669 kb on - strand, within CA264_03315 at 778.750 kb on - strand, within CA264_03315 at 778.806 kb on - strand, within CA264_03315 at 778.824 kb on + strand, within CA264_03315 at 778.824 kb on + strand, within CA264_03315 at 778.944 kb on + strand at 778.945 kb on - strand at 778.972 kb on + strand at 778.973 kb on - strand at 778.992 kb on + strand at 778.993 kb on - strand at 779.269 kb on - strand, within CA264_03320 at 779.416 kb on + strand, within CA264_03320 at 779.512 kb on + strand, within CA264_03320 at 779.540 kb on - strand, within CA264_03320 at 779.540 kb on - strand, within CA264_03320 at 779.715 kb on - strand, within CA264_03320 at 779.860 kb on - strand, within CA264_03320 at 780.166 kb on + strand at 780.166 kb on + strand at 780.166 kb on + strand at 780.169 kb on + strand at 780.170 kb on - strand at 780.170 kb on - strand at 780.191 kb on - strand at 780.214 kb on - strand at 780.220 kb on + strand at 780.323 kb on + strand at 780.324 kb on - strand at 780.338 kb on + strand at 780.339 kb on - strand at 780.339 kb on - strand at 780.342 kb on + strand at 780.354 kb on - strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.364 kb on + strand at 780.364 kb on + strand at 780.365 kb on - strand at 780.365 kb on - strand at 780.365 kb on - strand at 780.372 kb on - strand at 780.377 kb on + strand at 780.377 kb on + strand at 780.377 kb on + strand at 780.378 kb on - strand at 780.379 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.387 kb on - strand at 780.472 kb on + strand, within CA264_03325 at 780.473 kb on - strand, within CA264_03325 at 780.566 kb on - strand, within CA264_03325 at 780.586 kb on + strand at 780.634 kb on - strand at 780.643 kb on - strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.648 kb on - strand at 780.648 kb on - strand at 780.648 kb on - strand at 780.657 kb on + strand at 780.657 kb on + strand at 780.658 kb on - strand at 780.658 kb on - strand at 780.668 kb on + strand at 780.668 kb on + strand at 780.677 kb on + strand at 780.685 kb on - strand at 780.700 kb on + strand at 780.702 kb on + strand at 780.702 kb on + strand at 780.702 kb on + strand at 780.713 kb on + strand at 780.713 kb on + strand at 780.714 kb on - strand at 780.792 kb on - strand, within CA264_03330 at 780.903 kb on - strand, within CA264_03330 at 781.040 kb on + strand, within CA264_03330 at 781.050 kb on + strand, within CA264_03330
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 778,065 + CA264_03315 0.28 -0.5 778,065 + CA264_03315 0.28 +0.2 778,066 - CA264_03315 0.28 -0.3 778,066 - CA264_03315 0.28 +0.7 778,066 - CA264_03315 0.28 -0.8 778,067 + CA264_03315 0.29 +1.0 778,067 + CA264_03315 0.29 +0.7 778,067 + CA264_03315 0.29 +1.0 778,067 + CA264_03315 0.29 +0.1 778,067 + CA264_03315 0.29 -0.4 778,067 + CA264_03315 0.29 -1.2 778,068 - CA264_03315 0.29 -3.4 778,068 - CA264_03315 0.29 -0.1 778,111 + CA264_03315 0.32 +0.0 778,270 + CA264_03315 0.44 -1.4 778,271 - CA264_03315 0.44 +0.6 778,271 - CA264_03315 0.44 -0.5 778,271 - CA264_03315 0.44 +0.7 778,271 - CA264_03315 0.44 -0.1 778,271 - CA264_03315 0.44 -0.4 778,271 - CA264_03315 0.44 -0.3 778,271 - CA264_03315 0.44 +0.0 778,334 + CA264_03315 0.49 +0.2 778,342 - CA264_03315 0.50 -0.3 778,363 - CA264_03315 0.51 -0.6 778,419 + CA264_03315 0.56 -0.1 778,419 + -1.6 778,435 - CA264_03315 0.57 -1.8 778,438 - CA264_03315 0.57 +0.5 778,489 - CA264_03315 0.61 +0.1 778,565 + CA264_03315 0.67 +0.3 778,570 + CA264_03315 0.67 -0.0 778,571 - CA264_03315 0.67 +0.1 778,602 + CA264_03315 0.70 +0.6 778,602 + CA264_03315 0.70 +0.2 778,602 + CA264_03315 0.70 -0.3 778,603 - CA264_03315 0.70 -0.2 778,603 - CA264_03315 0.70 +0.8 778,638 - CA264_03315 0.73 +2.6 778,641 + CA264_03315 0.73 +3.0 778,642 - CA264_03315 0.73 +0.0 778,642 - CA264_03315 0.73 -0.3 778,668 + CA264_03315 0.75 +2.7 778,669 - CA264_03315 0.75 +0.3 778,750 - CA264_03315 0.81 +0.0 778,806 - CA264_03315 0.85 -0.5 778,824 + CA264_03315 0.87 +0.0 778,824 + CA264_03315 0.87 -0.2 778,944 + +0.7 778,945 - +1.3 778,972 + -0.5 778,973 - -0.3 778,992 + +0.2 778,993 - -1.1 779,269 - CA264_03320 0.24 +0.7 779,416 + CA264_03320 0.37 +0.4 779,512 + CA264_03320 0.45 +3.2 779,540 - CA264_03320 0.48 +0.0 779,540 - CA264_03320 0.48 +0.6 779,715 - CA264_03320 0.63 -0.1 779,860 - CA264_03320 0.76 -0.3 780,166 + +1.1 780,166 + -0.4 780,166 + +0.4 780,169 + -1.0 780,170 - -1.6 780,170 - -2.4 780,191 - +0.9 780,214 - +4.0 780,220 + +0.0 780,323 + -1.0 780,324 - +1.0 780,338 + +2.2 780,339 - -0.1 780,339 - +1.2 780,342 + +0.1 780,354 - -0.2 780,358 + +0.5 780,358 + -0.2 780,358 + +0.6 780,358 + -0.8 780,358 + -0.7 780,362 + +0.3 780,362 + -0.3 780,362 + +1.0 780,362 + +0.9 780,363 - -0.4 780,363 - -0.2 780,363 - -0.7 780,363 - +0.3 780,364 + +3.3 780,364 + -0.6 780,365 - +0.6 780,365 - +1.0 780,365 - -1.4 780,372 - +0.0 780,377 + -0.2 780,377 + +0.0 780,377 + -0.5 780,378 - +0.3 780,379 + +0.4 780,384 + +0.6 780,384 + +0.6 780,384 + -0.1 780,384 + -1.0 780,387 - +2.6 780,472 + CA264_03325 0.40 +0.1 780,473 - CA264_03325 0.40 -1.1 780,566 - CA264_03325 0.85 -0.6 780,586 + +0.3 780,634 - -0.5 780,643 - -1.3 780,647 + +0.1 780,647 + -0.3 780,647 + -0.8 780,647 + -0.1 780,647 + -0.7 780,647 + -1.1 780,648 - +0.2 780,648 - -0.7 780,648 - -0.3 780,657 + -0.5 780,657 + +1.3 780,658 - +0.8 780,658 - +0.4 780,668 + +0.1 780,668 + +0.0 780,677 + +0.1 780,685 - +0.0 780,700 + +0.3 780,702 + -0.4 780,702 + +1.4 780,702 + +0.1 780,713 + +0.0 780,713 + +0.1 780,714 - +0.0 780,792 - CA264_03330 0.10 -0.2 780,903 - CA264_03330 0.35 -0.4 781,040 + CA264_03330 0.65 +0.0 781,050 + CA264_03330 0.67 +0.6
Or see this region's nucleotide sequence