Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03105 and CA264_03110 are separated by 149 nucleotides CA264_03110 and CA264_03115 are separated by 68 nucleotides CA264_03115 and CA264_03120 are separated by 152 nucleotides
CA264_03105: CA264_03105 - T9SS C-terminal target domain-containing protein, at 724,725 to 726,305
_03105
CA264_03110: CA264_03110 - transporter, at 726,455 to 727,366
_03110
CA264_03115: CA264_03115 - hypothetical protein, at 727,435 to 728,061
_03115
CA264_03120: CA264_03120 - protoporphyrinogen IX oxidase, at 728,214 to 728,750
_03120
Position (kb) 726
727
728 Strain fitness (log2 ratio) -2
-1
0
1 at 725.586 kb on + strand, within CA264_03105 at 725.586 kb on + strand, within CA264_03105 at 725.587 kb on - strand, within CA264_03105 at 725.748 kb on - strand, within CA264_03105 at 725.838 kb on - strand, within CA264_03105 at 725.843 kb on + strand, within CA264_03105 at 725.843 kb on + strand, within CA264_03105 at 725.844 kb on - strand, within CA264_03105 at 725.880 kb on + strand, within CA264_03105 at 725.880 kb on + strand, within CA264_03105 at 725.885 kb on - strand, within CA264_03105 at 725.885 kb on - strand, within CA264_03105 at 725.928 kb on + strand, within CA264_03105 at 725.971 kb on + strand, within CA264_03105 at 725.971 kb on + strand, within CA264_03105 at 725.972 kb on - strand, within CA264_03105 at 725.972 kb on - strand, within CA264_03105 at 725.973 kb on + strand, within CA264_03105 at 725.973 kb on + strand, within CA264_03105 at 725.974 kb on - strand, within CA264_03105 at 725.974 kb on - strand, within CA264_03105 at 725.974 kb on - strand, within CA264_03105 at 725.975 kb on + strand, within CA264_03105 at 725.976 kb on - strand, within CA264_03105 at 726.016 kb on - strand, within CA264_03105 at 726.071 kb on - strand, within CA264_03105 at 726.073 kb on - strand, within CA264_03105 at 726.098 kb on - strand, within CA264_03105 at 726.142 kb on + strand, within CA264_03105 at 726.143 kb on - strand, within CA264_03105 at 726.247 kb on - strand at 726.304 kb on - strand at 726.467 kb on - strand at 726.468 kb on + strand at 726.557 kb on - strand, within CA264_03110 at 726.560 kb on - strand, within CA264_03110 at 726.560 kb on - strand, within CA264_03110 at 726.563 kb on + strand, within CA264_03110 at 726.563 kb on + strand, within CA264_03110 at 726.563 kb on + strand, within CA264_03110 at 726.564 kb on - strand, within CA264_03110 at 726.564 kb on - strand, within CA264_03110 at 726.564 kb on - strand, within CA264_03110 at 726.564 kb on - strand, within CA264_03110 at 726.590 kb on + strand, within CA264_03110 at 726.590 kb on + strand, within CA264_03110 at 726.591 kb on - strand, within CA264_03110 at 726.730 kb on + strand, within CA264_03110 at 726.733 kb on - strand, within CA264_03110 at 726.736 kb on + strand, within CA264_03110 at 726.736 kb on + strand, within CA264_03110 at 726.845 kb on - strand, within CA264_03110 at 726.857 kb on - strand, within CA264_03110 at 726.982 kb on + strand, within CA264_03110 at 726.982 kb on + strand, within CA264_03110 at 726.982 kb on + strand, within CA264_03110 at 727.212 kb on + strand, within CA264_03110 at 727.216 kb on - strand, within CA264_03110 at 727.265 kb on + strand, within CA264_03110 at 727.272 kb on + strand, within CA264_03110 at 727.344 kb on - strand at 727.364 kb on + strand at 727.377 kb on + strand at 727.377 kb on + strand at 727.391 kb on - strand at 727.393 kb on - strand at 727.446 kb on - strand at 727.478 kb on + strand at 727.479 kb on - strand at 727.669 kb on + strand, within CA264_03115 at 727.670 kb on - strand, within CA264_03115 at 727.670 kb on - strand, within CA264_03115 at 727.670 kb on - strand, within CA264_03115 at 727.673 kb on + strand, within CA264_03115 at 727.673 kb on + strand, within CA264_03115 at 727.674 kb on - strand, within CA264_03115 at 728.061 kb on + strand at 728.062 kb on - strand at 728.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 725,586 + CA264_03105 0.54 +0.3 725,586 + CA264_03105 0.54 +1.6 725,587 - CA264_03105 0.55 +0.5 725,748 - CA264_03105 0.65 +0.1 725,838 - CA264_03105 0.70 +0.6 725,843 + CA264_03105 0.71 -0.0 725,843 + CA264_03105 0.71 +0.0 725,844 - CA264_03105 0.71 +0.4 725,880 + CA264_03105 0.73 +1.3 725,880 + CA264_03105 0.73 +1.7 725,885 - CA264_03105 0.73 -0.9 725,885 - CA264_03105 0.73 -0.9 725,928 + CA264_03105 0.76 -0.1 725,971 + CA264_03105 0.79 +0.0 725,971 + CA264_03105 0.79 +0.5 725,972 - CA264_03105 0.79 -1.0 725,972 - CA264_03105 0.79 +0.9 725,973 + CA264_03105 0.79 +0.3 725,973 + CA264_03105 0.79 -0.1 725,974 - CA264_03105 0.79 +0.2 725,974 - CA264_03105 0.79 +0.7 725,974 - CA264_03105 0.79 +0.1 725,975 + CA264_03105 0.79 +1.0 725,976 - CA264_03105 0.79 -0.6 726,016 - CA264_03105 0.82 -0.2 726,071 - CA264_03105 0.85 +0.4 726,073 - CA264_03105 0.85 +0.5 726,098 - CA264_03105 0.87 -0.1 726,142 + CA264_03105 0.90 +0.7 726,143 - CA264_03105 0.90 -1.2 726,247 - +0.9 726,304 - -0.2 726,467 - -0.6 726,468 + -0.5 726,557 - CA264_03110 0.11 +0.7 726,560 - CA264_03110 0.12 +0.1 726,560 - CA264_03110 0.12 -1.6 726,563 + CA264_03110 0.12 +0.1 726,563 + CA264_03110 0.12 +0.3 726,563 + CA264_03110 0.12 -1.4 726,564 - CA264_03110 0.12 -0.5 726,564 - CA264_03110 0.12 +0.6 726,564 - CA264_03110 0.12 +0.2 726,564 - CA264_03110 0.12 +0.0 726,590 + CA264_03110 0.15 -0.3 726,590 + CA264_03110 0.15 +1.5 726,591 - CA264_03110 0.15 -0.6 726,730 + CA264_03110 0.30 +0.2 726,733 - CA264_03110 0.30 +1.0 726,736 + CA264_03110 0.31 +0.6 726,736 + CA264_03110 0.31 -0.5 726,845 - CA264_03110 0.43 +0.2 726,857 - CA264_03110 0.44 -2.2 726,982 + CA264_03110 0.58 +1.0 726,982 + CA264_03110 0.58 +1.3 726,982 + CA264_03110 0.58 +1.3 727,212 + CA264_03110 0.83 +0.0 727,216 - CA264_03110 0.83 +0.3 727,265 + CA264_03110 0.89 -0.2 727,272 + CA264_03110 0.90 -1.2 727,344 - -0.6 727,364 + +0.6 727,377 + +1.4 727,377 + -0.6 727,391 - -0.5 727,393 - -0.5 727,446 - -0.3 727,478 + -0.7 727,479 - -0.0 727,669 + CA264_03115 0.37 +0.2 727,670 - CA264_03115 0.37 -0.5 727,670 - CA264_03115 0.37 -1.2 727,670 - CA264_03115 0.37 -0.6 727,673 + CA264_03115 0.38 -0.6 727,673 + CA264_03115 0.38 +0.1 727,674 - CA264_03115 0.38 -0.5 728,061 + +0.0 728,062 - -0.4 728,082 - -0.6
Or see this region's nucleotide sequence