Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03020

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03015 and CA264_03020 are separated by 6 nucleotidesCA264_03020 and CA264_03025 are separated by 434 nucleotides CA264_03015: CA264_03015 - hypothetical protein, at 692,168 to 696,712 _03015 CA264_03020: CA264_03020 - hypothetical protein, at 696,719 to 697,711 _03020 CA264_03025: CA264_03025 - T9SS C-terminal target domain-containing protein, at 698,146 to 699,651 _03025 Position (kb) 696 697 698Strain fitness (log2 ratio) -2 -1 0 1 2 3at 695.726 kb on - strand, within CA264_03015at 695.731 kb on + strand, within CA264_03015at 695.853 kb on + strand, within CA264_03015at 695.866 kb on - strand, within CA264_03015at 695.874 kb on + strand, within CA264_03015at 695.965 kb on - strand, within CA264_03015at 695.965 kb on - strand, within CA264_03015at 696.001 kb on - strand, within CA264_03015at 696.035 kb on - strand, within CA264_03015at 696.050 kb on + strand, within CA264_03015at 696.051 kb on - strand, within CA264_03015at 696.051 kb on - strand, within CA264_03015at 696.060 kb on + strand, within CA264_03015at 696.061 kb on - strand, within CA264_03015at 696.061 kb on - strand, within CA264_03015at 696.061 kb on - strand, within CA264_03015at 696.061 kb on - strand, within CA264_03015at 696.104 kb on - strand, within CA264_03015at 696.104 kb on - strand, within CA264_03015at 696.104 kb on - strand, within CA264_03015at 696.124 kb on - strand, within CA264_03015at 696.149 kb on - strand, within CA264_03015at 696.205 kb on - strand, within CA264_03015at 696.247 kb on + strand, within CA264_03015at 696.247 kb on + strand, within CA264_03015at 696.247 kb on + strand, within CA264_03015at 696.247 kb on + strand, within CA264_03015at 696.248 kb on - strand, within CA264_03015at 696.248 kb on - strand, within CA264_03015at 696.248 kb on - strand, within CA264_03015at 696.252 kb on - strand, within CA264_03015at 696.252 kb on - strand, within CA264_03015at 696.394 kb on + strandat 696.395 kb on - strandat 696.454 kb on - strandat 696.525 kb on - strandat 696.527 kb on + strandat 696.528 kb on - strandat 696.645 kb on - strandat 696.650 kb on + strandat 696.650 kb on + strandat 696.663 kb on + strandat 696.693 kb on + strandat 696.694 kb on - strandat 696.696 kb on + strandat 696.697 kb on - strandat 696.697 kb on - strandat 696.697 kb on - strandat 696.711 kb on - strandat 696.730 kb on + strandat 696.730 kb on + strandat 696.731 kb on - strandat 696.731 kb on - strandat 696.732 kb on + strandat 696.732 kb on + strandat 696.733 kb on - strandat 696.733 kb on - strandat 696.735 kb on + strandat 696.736 kb on - strandat 696.736 kb on - strandat 696.842 kb on + strand, within CA264_03020at 696.935 kb on - strand, within CA264_03020at 696.965 kb on + strand, within CA264_03020at 696.966 kb on - strand, within CA264_03020at 697.074 kb on + strand, within CA264_03020at 697.075 kb on - strand, within CA264_03020at 697.145 kb on + strand, within CA264_03020at 697.249 kb on + strand, within CA264_03020at 697.249 kb on + strand, within CA264_03020at 697.250 kb on - strand, within CA264_03020at 697.251 kb on + strand, within CA264_03020at 697.271 kb on - strand, within CA264_03020at 697.296 kb on - strand, within CA264_03020at 697.312 kb on - strand, within CA264_03020at 697.321 kb on + strand, within CA264_03020at 697.391 kb on - strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.416 kb on + strand, within CA264_03020at 697.417 kb on - strand, within CA264_03020at 697.439 kb on + strand, within CA264_03020at 697.439 kb on + strand, within CA264_03020at 697.536 kb on + strand, within CA264_03020at 697.537 kb on - strand, within CA264_03020at 697.537 kb on - strand, within CA264_03020at 697.541 kb on + strand, within CA264_03020at 697.542 kb on - strand, within CA264_03020at 697.592 kb on + strand, within CA264_03020at 697.655 kb on + strandat 697.698 kb on + strandat 697.709 kb on + strandat 697.710 kb on - strandat 697.721 kb on + strandat 697.722 kb on - strandat 697.768 kb on - strandat 697.768 kb on - strandat 697.806 kb on + strandat 697.812 kb on + strandat 697.827 kb on - strandat 697.921 kb on - strandat 697.959 kb on - strandat 698.028 kb on + strandat 698.058 kb on + strandat 698.059 kb on - strandat 698.095 kb on + strandat 698.095 kb on + strandat 698.095 kb on + strandat 698.095 kb on + strandat 698.096 kb on - strandat 698.096 kb on - strandat 698.096 kb on - strandat 698.096 kb on - strandat 698.096 kb on - strandat 698.139 kb on + strandat 698.140 kb on - strandat 698.140 kb on - strandat 698.177 kb on - strandat 698.196 kb on - strandat 698.199 kb on - strandat 698.216 kb on - strandat 698.257 kb on + strandat 698.258 kb on - strandat 698.290 kb on + strandat 698.290 kb on + strandat 698.291 kb on - strandat 698.292 kb on + strandat 698.440 kb on - strand, within CA264_03025at 698.625 kb on + strand, within CA264_03025at 698.625 kb on + strand, within CA264_03025at 698.625 kb on + strand, within CA264_03025at 698.625 kb on + strand, within CA264_03025at 698.626 kb on - strand, within CA264_03025at 698.626 kb on - strand, within CA264_03025at 698.644 kb on - strand, within CA264_03025

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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695,726 - CA264_03015 0.78 -0.0
695,731 + CA264_03015 0.78 +0.2
695,853 + CA264_03015 0.81 +1.0
695,866 - CA264_03015 0.81 -0.9
695,874 + CA264_03015 0.82 +0.2
695,965 - CA264_03015 0.84 +1.3
695,965 - CA264_03015 0.84 -0.3
696,001 - CA264_03015 0.84 -0.8
696,035 - CA264_03015 0.85 +0.8
696,050 + CA264_03015 0.85 +0.8
696,051 - CA264_03015 0.85 -0.6
696,051 - CA264_03015 0.85 +0.3
696,060 + CA264_03015 0.86 -0.2
696,061 - CA264_03015 0.86 -1.4
696,061 - CA264_03015 0.86 -0.4
696,061 - CA264_03015 0.86 -0.6
696,061 - CA264_03015 0.86 -0.1
696,104 - CA264_03015 0.87 -0.2
696,104 - CA264_03015 0.87 +0.3
696,104 - CA264_03015 0.87 +0.4
696,124 - CA264_03015 0.87 -0.3
696,149 - CA264_03015 0.88 +0.8
696,205 - CA264_03015 0.89 -0.1
696,247 + CA264_03015 0.90 +0.5
696,247 + CA264_03015 0.90 -0.3
696,247 + CA264_03015 0.90 +0.8
696,247 + CA264_03015 0.90 +1.0
696,248 - CA264_03015 0.90 -0.6
696,248 - CA264_03015 0.90 -0.6
696,248 - CA264_03015 0.90 -0.1
696,252 - CA264_03015 0.90 -0.8
696,252 - CA264_03015 0.90 -0.1
696,394 + +1.0
696,395 - -0.6
696,454 - -0.2
696,525 - -1.0
696,527 + +0.5
696,528 - +0.8
696,645 - +1.0
696,650 + -0.1
696,650 + +1.6
696,663 + +0.5
696,693 + +1.6
696,694 - -0.1
696,696 + +0.3
696,697 - +2.6
696,697 - -0.6
696,697 - +0.2
696,711 - +0.0
696,730 + -0.6
696,730 + -0.8
696,731 - +0.5
696,731 - -1.1
696,732 + +0.0
696,732 + -0.6
696,733 - +0.0
696,733 - +0.1
696,735 + +0.5
696,736 - -1.0
696,736 - -0.2
696,842 + CA264_03020 0.12 +0.4
696,935 - CA264_03020 0.22 -0.6
696,965 + CA264_03020 0.25 +0.0
696,966 - CA264_03020 0.25 -0.6
697,074 + CA264_03020 0.36 +0.5
697,075 - CA264_03020 0.36 -0.4
697,145 + CA264_03020 0.43 +0.7
697,249 + CA264_03020 0.53 +0.3
697,249 + CA264_03020 0.53 +1.0
697,250 - CA264_03020 0.53 -0.4
697,251 + CA264_03020 0.54 +0.4
697,271 - CA264_03020 0.56 +2.3
697,296 - CA264_03020 0.58 -0.5
697,312 - CA264_03020 0.60 -0.2
697,321 + CA264_03020 0.61 +1.1
697,391 - CA264_03020 0.68 +0.0
697,416 + CA264_03020 0.70 +1.0
697,416 + CA264_03020 0.70 -0.7
697,416 + CA264_03020 0.70 +1.0
697,416 + CA264_03020 0.70 -0.2
697,416 + CA264_03020 0.70 +0.5
697,416 + CA264_03020 0.70 +3.6
697,416 + CA264_03020 0.70 +0.1
697,417 - CA264_03020 0.70 +2.0
697,439 + CA264_03020 0.73 +0.2
697,439 + CA264_03020 0.73 +0.6
697,536 + CA264_03020 0.82 -0.1
697,537 - CA264_03020 0.82 -0.6
697,537 - CA264_03020 0.82 +0.1
697,541 + CA264_03020 0.83 +0.7
697,542 - CA264_03020 0.83 -1.4
697,592 + CA264_03020 0.88 -0.0
697,655 + +0.8
697,698 + +0.6
697,709 + +0.8
697,710 - -0.2
697,721 + +1.0
697,722 - +0.2
697,768 - -0.8
697,768 - +0.0
697,806 + +0.9
697,812 + +0.8
697,827 - -0.3
697,921 - +1.0
697,959 - -0.4
698,028 + +0.8
698,058 + +0.5
698,059 - -0.5
698,095 + +1.0
698,095 + +0.8
698,095 + +1.7
698,095 + +0.0
698,096 - -0.1
698,096 - -1.0
698,096 - +0.3
698,096 - -0.2
698,096 - +0.3
698,139 + -0.1
698,140 - -0.1
698,140 - -0.1
698,177 - -1.2
698,196 - +0.0
698,199 - -2.2
698,216 - -0.7
698,257 + +1.7
698,258 - +1.0
698,290 + +1.0
698,290 + +0.3
698,291 - -1.0
698,292 + +1.2
698,440 - CA264_03025 0.20 -0.8
698,625 + CA264_03025 0.32 -1.1
698,625 + CA264_03025 0.32 +0.8
698,625 + CA264_03025 0.32 -0.3
698,625 + CA264_03025 0.32 +0.6
698,626 - CA264_03025 0.32 -1.0
698,626 - CA264_03025 0.32 +1.5
698,644 - CA264_03025 0.33 -0.5

Or see this region's nucleotide sequence