Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02335 and CA264_02340 are separated by 343 nucleotides CA264_02340 and CA264_02345 are separated by 165 nucleotides CA264_02345 and CA264_02350 are separated by 25 nucleotides
CA264_02335: CA264_02335 - hypothetical protein, at 539,545 to 540,114
_02335
CA264_02340: CA264_02340 - hypothetical protein, at 540,458 to 541,957
_02340
CA264_02345: CA264_02345 - restriction endonuclease, at 542,123 to 542,416
_02345
CA264_02350: CA264_02350 - nicotinate phosphoribosyltransferase, at 542,442 to 543,908
_02350
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 539.469 kb on - strand at 539.469 kb on - strand at 539.476 kb on + strand at 539.477 kb on - strand at 539.483 kb on + strand at 539.501 kb on + strand at 539.510 kb on + strand at 539.511 kb on - strand at 539.524 kb on - strand at 539.538 kb on - strand at 539.624 kb on + strand, within CA264_02335 at 539.624 kb on + strand, within CA264_02335 at 539.625 kb on - strand, within CA264_02335 at 539.795 kb on + strand, within CA264_02335 at 539.796 kb on - strand, within CA264_02335 at 539.796 kb on - strand, within CA264_02335 at 539.861 kb on - strand, within CA264_02335 at 539.936 kb on - strand, within CA264_02335 at 539.960 kb on - strand, within CA264_02335 at 539.960 kb on - strand, within CA264_02335 at 540.048 kb on + strand, within CA264_02335 at 540.051 kb on + strand, within CA264_02335 at 540.052 kb on - strand, within CA264_02335 at 540.052 kb on - strand, within CA264_02335 at 540.060 kb on + strand at 540.060 kb on + strand at 540.060 kb on + strand at 540.061 kb on - strand at 540.061 kb on - strand at 540.061 kb on - strand at 540.061 kb on - strand at 540.061 kb on - strand at 540.112 kb on + strand at 540.113 kb on - strand at 540.156 kb on + strand at 540.245 kb on + strand at 540.389 kb on - strand at 540.390 kb on + strand at 540.390 kb on + strand at 540.391 kb on - strand at 540.391 kb on - strand at 540.393 kb on + strand at 540.393 kb on + strand at 540.393 kb on + strand at 540.394 kb on - strand at 540.400 kb on + strand at 540.401 kb on - strand at 540.506 kb on - strand at 540.510 kb on + strand at 540.563 kb on - strand at 540.576 kb on + strand at 540.747 kb on + strand, within CA264_02340 at 540.779 kb on - strand, within CA264_02340 at 540.924 kb on - strand, within CA264_02340 at 540.937 kb on - strand, within CA264_02340 at 540.939 kb on - strand, within CA264_02340 at 541.018 kb on + strand, within CA264_02340 at 541.019 kb on - strand, within CA264_02340 at 541.054 kb on + strand, within CA264_02340 at 541.055 kb on - strand, within CA264_02340 at 541.063 kb on + strand, within CA264_02340 at 541.097 kb on - strand, within CA264_02340 at 541.122 kb on - strand, within CA264_02340 at 541.151 kb on + strand, within CA264_02340 at 541.152 kb on - strand, within CA264_02340 at 541.152 kb on - strand, within CA264_02340 at 541.152 kb on - strand, within CA264_02340 at 541.161 kb on - strand, within CA264_02340 at 541.161 kb on - strand, within CA264_02340 at 541.368 kb on + strand, within CA264_02340 at 541.407 kb on - strand, within CA264_02340 at 541.407 kb on - strand, within CA264_02340 at 541.407 kb on - strand, within CA264_02340 at 541.553 kb on - strand, within CA264_02340 at 541.555 kb on - strand, within CA264_02340 at 541.571 kb on + strand, within CA264_02340 at 541.571 kb on + strand, within CA264_02340 at 541.572 kb on - strand, within CA264_02340 at 541.572 kb on - strand, within CA264_02340 at 541.573 kb on + strand, within CA264_02340 at 541.695 kb on - strand, within CA264_02340 at 541.814 kb on + strand at 541.846 kb on - strand at 541.874 kb on + strand at 541.875 kb on - strand at 541.883 kb on + strand at 541.884 kb on - strand at 542.030 kb on - strand at 542.030 kb on - strand at 542.030 kb on - strand at 542.035 kb on - strand at 542.092 kb on + strand at 542.095 kb on + strand at 542.096 kb on - strand at 542.096 kb on - strand at 542.098 kb on - strand at 542.098 kb on - strand at 542.098 kb on - strand at 542.098 kb on - strand at 542.119 kb on - strand at 542.127 kb on + strand at 542.149 kb on - strand at 542.149 kb on - strand at 542.149 kb on - strand at 542.151 kb on + strand at 542.151 kb on + strand at 542.281 kb on + strand, within CA264_02345 at 542.282 kb on - strand, within CA264_02345 at 542.306 kb on + strand, within CA264_02345 at 542.311 kb on + strand, within CA264_02345 at 542.312 kb on - strand, within CA264_02345 at 542.312 kb on - strand, within CA264_02345 at 542.314 kb on + strand, within CA264_02345 at 542.314 kb on + strand, within CA264_02345 at 542.314 kb on + strand, within CA264_02345 at 542.414 kb on + strand at 542.489 kb on - strand at 542.522 kb on - strand at 542.535 kb on + strand at 542.547 kb on + strand at 542.548 kb on - strand at 542.569 kb on - strand at 542.583 kb on - strand at 542.584 kb on + strand at 542.584 kb on + strand at 542.585 kb on - strand at 542.585 kb on - strand at 542.585 kb on - strand at 542.594 kb on + strand, within CA264_02350 at 542.594 kb on + strand, within CA264_02350 at 542.616 kb on - strand, within CA264_02350 at 542.617 kb on + strand, within CA264_02350 at 542.617 kb on + strand, within CA264_02350 at 542.618 kb on - strand, within CA264_02350 at 542.622 kb on - strand, within CA264_02350 at 542.660 kb on + strand, within CA264_02350 at 542.751 kb on - strand, within CA264_02350 at 542.752 kb on + strand, within CA264_02350 at 542.753 kb on - strand, within CA264_02350 at 542.786 kb on - strand, within CA264_02350 at 542.852 kb on + strand, within CA264_02350 at 542.853 kb on - strand, within CA264_02350 at 542.853 kb on - strand, within CA264_02350 at 542.854 kb on + strand, within CA264_02350 at 542.891 kb on - strand, within CA264_02350
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 539,469 - -0.3 539,469 - -0.4 539,476 + -1.7 539,477 - -0.5 539,483 + -0.1 539,501 + -0.6 539,510 + +0.2 539,511 - -0.6 539,524 - +2.0 539,538 - -0.0 539,624 + CA264_02335 0.14 -0.6 539,624 + CA264_02335 0.14 +0.6 539,625 - CA264_02335 0.14 -0.1 539,795 + CA264_02335 0.44 +0.5 539,796 - CA264_02335 0.44 -0.0 539,796 - CA264_02335 0.44 +0.2 539,861 - CA264_02335 0.55 -0.7 539,936 - CA264_02335 0.69 -1.4 539,960 - CA264_02335 0.73 -0.0 539,960 - CA264_02335 0.73 -0.1 540,048 + CA264_02335 0.88 -0.0 540,051 + CA264_02335 0.89 +0.5 540,052 - CA264_02335 0.89 -0.5 540,052 - CA264_02335 0.89 +0.4 540,060 + -0.0 540,060 + -0.3 540,060 + -1.6 540,061 - +1.0 540,061 - -0.5 540,061 - -0.2 540,061 - +0.3 540,061 - -1.0 540,112 + +0.1 540,113 - -1.0 540,156 + +0.4 540,245 + +0.1 540,389 - -0.0 540,390 + -0.6 540,390 + -0.9 540,391 - -0.7 540,391 - +1.0 540,393 + -0.0 540,393 + -0.3 540,393 + +0.0 540,394 - -1.0 540,400 + +1.0 540,401 - +0.3 540,506 - +0.9 540,510 + -0.5 540,563 - -0.0 540,576 + -0.5 540,747 + CA264_02340 0.19 +0.9 540,779 - CA264_02340 0.21 +0.4 540,924 - CA264_02340 0.31 +0.7 540,937 - CA264_02340 0.32 -0.1 540,939 - CA264_02340 0.32 -1.5 541,018 + CA264_02340 0.37 -0.2 541,019 - CA264_02340 0.37 +0.2 541,054 + CA264_02340 0.40 +1.1 541,055 - CA264_02340 0.40 -0.2 541,063 + CA264_02340 0.40 +1.2 541,097 - CA264_02340 0.43 -0.2 541,122 - CA264_02340 0.44 -0.8 541,151 + CA264_02340 0.46 +0.9 541,152 - CA264_02340 0.46 -0.2 541,152 - CA264_02340 0.46 -0.9 541,152 - CA264_02340 0.46 -0.2 541,161 - CA264_02340 0.47 -1.1 541,161 - CA264_02340 0.47 -0.2 541,368 + CA264_02340 0.61 -0.6 541,407 - CA264_02340 0.63 +0.1 541,407 - CA264_02340 0.63 +0.2 541,407 - CA264_02340 0.63 -0.1 541,553 - CA264_02340 0.73 +0.7 541,555 - CA264_02340 0.73 +0.6 541,571 + CA264_02340 0.74 -0.8 541,571 + CA264_02340 0.74 +1.2 541,572 - CA264_02340 0.74 +0.2 541,572 - CA264_02340 0.74 +0.7 541,573 + CA264_02340 0.74 -0.3 541,695 - CA264_02340 0.82 -0.2 541,814 + +1.0 541,846 - +0.6 541,874 + +0.3 541,875 - +0.7 541,883 + -0.0 541,884 - +0.5 542,030 - +0.7 542,030 - +1.1 542,030 - -0.4 542,035 - -0.2 542,092 + -2.2 542,095 + +0.2 542,096 - -0.5 542,096 - +1.0 542,098 - -1.0 542,098 - +0.8 542,098 - -0.5 542,098 - -0.2 542,119 - -0.2 542,127 + -0.2 542,149 - +0.1 542,149 - -0.4 542,149 - +0.3 542,151 + -1.7 542,151 + -0.8 542,281 + CA264_02345 0.54 +0.6 542,282 - CA264_02345 0.54 -0.2 542,306 + CA264_02345 0.62 +2.0 542,311 + CA264_02345 0.64 +0.3 542,312 - CA264_02345 0.64 +0.2 542,312 - CA264_02345 0.64 +0.4 542,314 + CA264_02345 0.65 -0.5 542,314 + CA264_02345 0.65 +0.3 542,314 + CA264_02345 0.65 +3.0 542,414 + -0.4 542,489 - +0.2 542,522 - -0.4 542,535 + -0.4 542,547 + -1.6 542,548 - -0.3 542,569 - -0.3 542,583 - +0.1 542,584 + -0.7 542,584 + +1.0 542,585 - +1.2 542,585 - -1.2 542,585 - -0.2 542,594 + CA264_02350 0.10 -0.5 542,594 + CA264_02350 0.10 -1.8 542,616 - CA264_02350 0.12 -0.0 542,617 + CA264_02350 0.12 -0.0 542,617 + CA264_02350 0.12 -1.9 542,618 - CA264_02350 0.12 -0.3 542,622 - CA264_02350 0.12 -0.8 542,660 + CA264_02350 0.15 -0.2 542,751 - CA264_02350 0.21 -0.3 542,752 + CA264_02350 0.21 -0.8 542,753 - CA264_02350 0.21 -0.4 542,786 - CA264_02350 0.23 -1.6 542,852 + CA264_02350 0.28 -1.8 542,853 - CA264_02350 0.28 -0.4 542,853 - CA264_02350 0.28 -0.5 542,854 + CA264_02350 0.28 -0.1 542,891 - CA264_02350 0.31 +0.4
Or see this region's nucleotide sequence