Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01735 and CA264_01740 are separated by 0 nucleotides CA264_01740 and CA264_01745 are separated by 8 nucleotides
CA264_01735: CA264_01735 - oxidoreductase, at 405,363 to 407,105
_01735
CA264_01740: CA264_01740 - proton-translocating NADH-quinone oxidoreductase subunit N, at 407,106 to 408,611
_01740
CA264_01745: CA264_01745 - amidophosphoribosyltransferase, at 408,620 to 410,515
_01745
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 406.736 kb on + strand, within CA264_01735 at 406.849 kb on - strand, within CA264_01735 at 406.855 kb on + strand, within CA264_01735 at 407.020 kb on + strand at 407.099 kb on - strand at 407.124 kb on + strand at 407.591 kb on + strand, within CA264_01740 at 407.629 kb on - strand, within CA264_01740 at 408.082 kb on + strand, within CA264_01740 at 408.114 kb on + strand, within CA264_01740 at 408.450 kb on + strand, within CA264_01740 at 408.584 kb on - strand at 408.607 kb on + strand at 408.607 kb on + strand at 408.615 kb on + strand at 408.615 kb on + strand at 408.615 kb on + strand at 408.633 kb on + strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.683 kb on + strand at 408.698 kb on + strand at 408.699 kb on - strand at 408.713 kb on + strand at 408.714 kb on - strand at 408.819 kb on - strand, within CA264_01745 at 408.887 kb on + strand, within CA264_01745 at 408.887 kb on + strand, within CA264_01745 at 408.887 kb on + strand, within CA264_01745 at 408.887 kb on + strand, within CA264_01745 at 408.888 kb on - strand, within CA264_01745 at 408.888 kb on - strand, within CA264_01745 at 408.889 kb on + strand, within CA264_01745 at 408.890 kb on - strand, within CA264_01745 at 408.972 kb on - strand, within CA264_01745 at 408.972 kb on - strand, within CA264_01745 at 408.989 kb on + strand, within CA264_01745 at 409.019 kb on - strand, within CA264_01745 at 409.162 kb on + strand, within CA264_01745 at 409.220 kb on + strand, within CA264_01745 at 409.223 kb on + strand, within CA264_01745 at 409.240 kb on + strand, within CA264_01745 at 409.240 kb on + strand, within CA264_01745 at 409.241 kb on - strand, within CA264_01745 at 409.329 kb on - strand, within CA264_01745 at 409.401 kb on - strand, within CA264_01745 at 409.404 kb on - strand, within CA264_01745 at 409.406 kb on + strand, within CA264_01745 at 409.406 kb on + strand, within CA264_01745 at 409.475 kb on + strand, within CA264_01745 at 409.495 kb on + strand, within CA264_01745
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 406,736 + CA264_01735 0.79 -1.0 406,849 - CA264_01735 0.85 -0.0 406,855 + CA264_01735 0.86 -1.3 407,020 + +1.0 407,099 - +1.0 407,124 + -1.3 407,591 + CA264_01740 0.32 -0.0 407,629 - CA264_01740 0.35 -0.0 408,082 + CA264_01740 0.65 -1.0 408,114 + CA264_01740 0.67 -1.6 408,450 + CA264_01740 0.89 -1.3 408,584 - -3.3 408,607 + -0.2 408,607 + -0.4 408,615 + +0.1 408,615 + +0.2 408,615 + +0.8 408,633 + -0.3 408,649 + -0.8 408,649 + +1.0 408,683 + +0.2 408,698 + -0.3 408,699 - +0.8 408,713 + -0.5 408,714 - +1.3 408,819 - CA264_01745 0.10 -0.6 408,887 + CA264_01745 0.14 +0.7 408,887 + CA264_01745 0.14 +2.0 408,887 + CA264_01745 0.14 +1.0 408,887 + CA264_01745 0.14 +0.3 408,888 - CA264_01745 0.14 -0.2 408,888 - CA264_01745 0.14 -0.8 408,889 + CA264_01745 0.14 -0.3 408,890 - CA264_01745 0.14 +1.7 408,972 - CA264_01745 0.19 -0.5 408,972 - CA264_01745 0.19 -0.6 408,989 + CA264_01745 0.19 -0.7 409,019 - CA264_01745 0.21 -0.6 409,162 + CA264_01745 0.29 -0.4 409,220 + CA264_01745 0.32 -0.6 409,223 + CA264_01745 0.32 +0.8 409,240 + CA264_01745 0.33 +2.4 409,240 + CA264_01745 0.33 +0.4 409,241 - CA264_01745 0.33 -0.0 409,329 - CA264_01745 0.37 -1.0 409,401 - CA264_01745 0.41 -1.6 409,404 - CA264_01745 0.41 +0.8 409,406 + CA264_01745 0.41 +0.6 409,406 + CA264_01745 0.41 +0.2 409,475 + CA264_01745 0.45 -0.2 409,495 + CA264_01745 0.46 -1.0
Or see this region's nucleotide sequence