Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01585

Experiment: marine_broth_2216 with nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_01575 and CA264_01580 are separated by 141 nucleotidesCA264_01580 and CA264_01585 are separated by 125 nucleotidesCA264_01585 and CA264_01590 overlap by 1 nucleotidesCA264_01590 and CA264_01595 are separated by 127 nucleotidesCA264_01595 and CA264_01600 are separated by 62 nucleotides CA264_01575: CA264_01575 - protoporphyrinogen oxidase, at 371,666 to 373,012 _01575 CA264_01580: CA264_01580 - D,D-heptose 1,7-bisphosphate phosphatase, at 373,154 to 373,675 _01580 CA264_01585: CA264_01585 - hypothetical protein, at 373,801 to 374,118 _01585 CA264_01590: CA264_01590 - hypothetical protein, at 374,118 to 374,561 _01590 CA264_01595: CA264_01595 - hypothetical protein, at 374,689 to 374,883 _01595 CA264_01600: CA264_01600 - arginine decarboxylase, at 374,946 to 376,340 _01600 Position (kb) 373 374 375Strain fitness (log2 ratio) -2 -1 0 1 2 3at 372.806 kb on + strand, within CA264_01575at 372.807 kb on - strand, within CA264_01575at 372.873 kb on + strand, within CA264_01575at 372.873 kb on + strand, within CA264_01575at 372.873 kb on + strand, within CA264_01575at 372.874 kb on - strand, within CA264_01575at 372.874 kb on - strand, within CA264_01575at 372.888 kb on - strandat 372.960 kb on + strandat 372.960 kb on + strandat 372.961 kb on - strandat 372.963 kb on + strandat 372.964 kb on - strandat 372.995 kb on + strandat 372.995 kb on + strandat 372.998 kb on + strandat 372.999 kb on - strandat 373.005 kb on - strandat 373.029 kb on + strandat 373.030 kb on - strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.050 kb on - strandat 373.050 kb on - strandat 373.050 kb on - strandat 373.050 kb on - strandat 373.081 kb on - strandat 373.112 kb on - strandat 373.141 kb on - strandat 373.217 kb on + strand, within CA264_01580at 373.217 kb on + strand, within CA264_01580at 373.219 kb on + strand, within CA264_01580at 373.502 kb on - strand, within CA264_01580at 373.654 kb on + strandat 373.655 kb on - strandat 373.655 kb on - strandat 373.657 kb on - strandat 373.682 kb on + strandat 373.710 kb on + strandat 373.710 kb on + strandat 373.710 kb on + strandat 373.711 kb on - strandat 373.711 kb on - strandat 373.734 kb on - strandat 373.734 kb on - strandat 373.738 kb on - strandat 373.745 kb on - strandat 373.781 kb on + strandat 373.792 kb on + strandat 373.851 kb on + strand, within CA264_01585at 373.888 kb on - strand, within CA264_01585at 373.907 kb on + strand, within CA264_01585at 373.949 kb on + strand, within CA264_01585at 374.010 kb on - strand, within CA264_01585at 374.076 kb on + strand, within CA264_01585at 374.076 kb on + strand, within CA264_01585at 374.076 kb on + strand, within CA264_01585at 374.077 kb on - strand, within CA264_01585at 374.111 kb on + strandat 374.111 kb on + strandat 374.112 kb on - strandat 374.117 kb on - strandat 374.173 kb on + strand, within CA264_01590at 374.174 kb on - strand, within CA264_01590at 374.293 kb on + strand, within CA264_01590at 374.424 kb on + strand, within CA264_01590at 374.424 kb on + strand, within CA264_01590at 374.424 kb on + strand, within CA264_01590at 374.450 kb on - strand, within CA264_01590at 374.462 kb on + strand, within CA264_01590at 374.463 kb on - strand, within CA264_01590at 374.463 kb on - strand, within CA264_01590at 374.463 kb on - strand, within CA264_01590at 374.467 kb on - strand, within CA264_01590at 374.499 kb on - strand, within CA264_01590at 374.499 kb on - strand, within CA264_01590at 374.503 kb on - strand, within CA264_01590at 374.506 kb on - strand, within CA264_01590at 374.506 kb on - strand, within CA264_01590at 374.533 kb on - strandat 374.538 kb on + strandat 374.661 kb on + strandat 374.665 kb on + strandat 374.665 kb on + strandat 374.665 kb on + strandat 374.665 kb on + strandat 374.728 kb on - strand, within CA264_01595at 374.728 kb on - strand, within CA264_01595at 374.772 kb on - strand, within CA264_01595at 374.777 kb on + strand, within CA264_01595at 374.825 kb on - strand, within CA264_01595at 374.857 kb on + strand, within CA264_01595at 374.858 kb on - strand, within CA264_01595at 374.858 kb on - strand, within CA264_01595at 374.858 kb on - strand, within CA264_01595at 374.896 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
remove
372,806 + CA264_01575 0.85 -0.0
372,807 - CA264_01575 0.85 +2.0
372,873 + CA264_01575 0.90 -0.4
372,873 + CA264_01575 0.90 -0.3
372,873 + CA264_01575 0.90 -2.3
372,874 - CA264_01575 0.90 +0.5
372,874 - CA264_01575 0.90 +0.2
372,888 - +0.0
372,960 + +0.1
372,960 + +0.2
372,961 - +1.0
372,963 + +3.0
372,964 - +0.4
372,995 + -0.4
372,995 + -0.2
372,998 + -0.1
372,999 - -0.2
373,005 - -0.5
373,029 + -0.4
373,030 - -0.9
373,049 + -0.0
373,049 + +0.7
373,049 + -0.8
373,049 + -0.5
373,049 + -0.6
373,050 - -0.1
373,050 - +0.4
373,050 - +0.3
373,050 - -0.6
373,081 - -0.2
373,112 - +0.6
373,141 - -0.4
373,217 + CA264_01580 0.12 -2.7
373,217 + CA264_01580 0.12 -1.8
373,219 + CA264_01580 0.12 -2.1
373,502 - CA264_01580 0.67 -2.0
373,654 + +1.4
373,655 - -0.7
373,655 - +0.7
373,657 - -0.6
373,682 + +0.2
373,710 + -0.4
373,710 + -1.2
373,710 + +1.0
373,711 - +0.8
373,711 - +0.2
373,734 - -2.0
373,734 - +0.7
373,738 - +0.4
373,745 - +1.1
373,781 + +0.7
373,792 + -0.5
373,851 + CA264_01585 0.16 +0.1
373,888 - CA264_01585 0.27 -0.0
373,907 + CA264_01585 0.33 -0.3
373,949 + CA264_01585 0.47 -0.4
374,010 - CA264_01585 0.66 -0.4
374,076 + CA264_01585 0.86 +1.1
374,076 + CA264_01585 0.86 +0.6
374,076 + CA264_01585 0.86 +0.2
374,077 - CA264_01585 0.87 +0.0
374,111 + -0.2
374,111 + -0.1
374,112 - -1.3
374,117 - +1.0
374,173 + CA264_01590 0.12 +0.0
374,174 - CA264_01590 0.13 +0.4
374,293 + CA264_01590 0.39 +0.2
374,424 + CA264_01590 0.69 -0.7
374,424 + CA264_01590 0.69 +0.3
374,424 + CA264_01590 0.69 -1.6
374,450 - CA264_01590 0.75 +1.0
374,462 + CA264_01590 0.77 +0.2
374,463 - CA264_01590 0.78 +0.9
374,463 - CA264_01590 0.78 -0.4
374,463 - CA264_01590 0.78 -0.4
374,467 - CA264_01590 0.79 -0.3
374,499 - CA264_01590 0.86 -0.0
374,499 - CA264_01590 0.86 -0.2
374,503 - CA264_01590 0.87 +0.1
374,506 - CA264_01590 0.87 -1.3
374,506 - CA264_01590 0.87 -0.3
374,533 - +1.0
374,538 + +0.1
374,661 + +0.2
374,665 + +1.0
374,665 + -0.0
374,665 + +0.8
374,665 + +0.6
374,728 - CA264_01595 0.20 +0.1
374,728 - CA264_01595 0.20 -0.8
374,772 - CA264_01595 0.43 -1.7
374,777 + CA264_01595 0.45 +0.4
374,825 - CA264_01595 0.70 +1.0
374,857 + CA264_01595 0.86 -0.1
374,858 - CA264_01595 0.87 +0.1
374,858 - CA264_01595 0.87 +0.3
374,858 - CA264_01595 0.87 +1.2
374,896 - +0.8

Or see this region's nucleotide sequence