Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01220

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01215 and CA264_01220 are separated by 559 nucleotidesCA264_01220 and CA264_01225 are separated by 172 nucleotides CA264_01215: CA264_01215 - hypothetical protein, at 286,237 to 288,438 _01215 CA264_01220: CA264_01220 - hypothetical protein, at 288,998 to 290,794 _01220 CA264_01225: CA264_01225 - X-Pro dipeptidyl-peptidase, at 290,967 to 292,856 _01225 Position (kb) 288 289 290 291Strain fitness (log2 ratio) -1 0 1 2at 288.536 kb on + strandat 288.537 kb on - strandat 288.562 kb on + strandat 288.735 kb on - strandat 288.799 kb on + strandat 288.806 kb on - strandat 288.868 kb on - strandat 288.914 kb on - strandat 288.998 kb on - strandat 289.024 kb on + strandat 289.037 kb on + strandat 289.037 kb on + strandat 289.111 kb on + strandat 289.153 kb on - strandat 289.195 kb on + strand, within CA264_01220at 289.344 kb on + strand, within CA264_01220at 289.351 kb on - strand, within CA264_01220at 289.385 kb on + strand, within CA264_01220at 289.385 kb on + strand, within CA264_01220at 289.385 kb on - strand, within CA264_01220at 289.386 kb on - strand, within CA264_01220at 289.386 kb on - strand, within CA264_01220at 289.417 kb on - strand, within CA264_01220at 289.425 kb on + strand, within CA264_01220at 289.426 kb on - strand, within CA264_01220at 289.426 kb on - strand, within CA264_01220at 289.426 kb on - strand, within CA264_01220at 289.449 kb on + strand, within CA264_01220at 289.449 kb on + strand, within CA264_01220at 289.476 kb on + strand, within CA264_01220at 289.476 kb on + strand, within CA264_01220at 289.508 kb on + strand, within CA264_01220at 289.509 kb on - strand, within CA264_01220at 289.511 kb on - strand, within CA264_01220at 289.511 kb on - strand, within CA264_01220at 289.511 kb on - strand, within CA264_01220at 289.517 kb on + strand, within CA264_01220at 289.537 kb on + strand, within CA264_01220at 289.562 kb on + strand, within CA264_01220at 289.562 kb on + strand, within CA264_01220at 289.563 kb on - strand, within CA264_01220at 289.563 kb on - strand, within CA264_01220at 289.563 kb on - strand, within CA264_01220at 289.567 kb on + strand, within CA264_01220at 289.567 kb on + strand, within CA264_01220at 289.567 kb on + strand, within CA264_01220at 289.567 kb on + strand, within CA264_01220at 289.568 kb on - strand, within CA264_01220at 289.569 kb on + strand, within CA264_01220at 289.569 kb on + strand, within CA264_01220at 289.569 kb on + strand, within CA264_01220at 289.570 kb on - strand, within CA264_01220at 289.570 kb on - strand, within CA264_01220at 289.570 kb on - strand, within CA264_01220at 289.595 kb on + strand, within CA264_01220at 289.595 kb on + strand, within CA264_01220at 289.595 kb on + strand, within CA264_01220at 289.595 kb on + strand, within CA264_01220at 289.596 kb on - strand, within CA264_01220at 289.596 kb on - strand, within CA264_01220at 289.596 kb on - strand, within CA264_01220at 289.596 kb on - strand, within CA264_01220at 289.596 kb on - strand, within CA264_01220at 289.598 kb on + strand, within CA264_01220at 289.598 kb on + strand, within CA264_01220at 289.598 kb on + strand, within CA264_01220at 289.599 kb on - strand, within CA264_01220at 289.599 kb on - strand, within CA264_01220at 289.599 kb on - strand, within CA264_01220at 289.603 kb on - strand, within CA264_01220at 289.603 kb on - strand, within CA264_01220at 289.603 kb on - strand, within CA264_01220at 289.603 kb on - strand, within CA264_01220at 289.606 kb on + strand, within CA264_01220at 289.606 kb on + strand, within CA264_01220at 289.606 kb on + strand, within CA264_01220at 289.607 kb on - strand, within CA264_01220at 289.654 kb on + strand, within CA264_01220at 289.672 kb on + strand, within CA264_01220at 289.684 kb on + strand, within CA264_01220at 289.739 kb on - strand, within CA264_01220at 289.741 kb on - strand, within CA264_01220at 289.769 kb on + strand, within CA264_01220at 289.769 kb on + strand, within CA264_01220at 289.769 kb on + strand, within CA264_01220at 289.770 kb on - strand, within CA264_01220at 289.770 kb on - strand, within CA264_01220at 289.770 kb on - strand, within CA264_01220at 289.776 kb on - strand, within CA264_01220at 289.776 kb on - strand, within CA264_01220at 289.842 kb on - strand, within CA264_01220at 289.842 kb on - strand, within CA264_01220at 289.844 kb on + strand, within CA264_01220at 289.845 kb on - strand, within CA264_01220at 289.848 kb on + strand, within CA264_01220at 289.848 kb on + strand, within CA264_01220at 289.849 kb on - strand, within CA264_01220at 289.849 kb on - strand, within CA264_01220at 289.881 kb on + strand, within CA264_01220at 289.881 kb on + strand, within CA264_01220at 289.881 kb on + strand, within CA264_01220at 289.891 kb on - strand, within CA264_01220at 289.900 kb on + strand, within CA264_01220at 289.901 kb on - strand, within CA264_01220at 289.916 kb on - strand, within CA264_01220at 289.935 kb on + strand, within CA264_01220at 289.941 kb on + strand, within CA264_01220at 290.017 kb on + strand, within CA264_01220at 290.036 kb on + strand, within CA264_01220at 290.036 kb on + strand, within CA264_01220at 290.039 kb on - strand, within CA264_01220at 290.039 kb on - strand, within CA264_01220at 290.050 kb on + strand, within CA264_01220at 290.050 kb on + strand, within CA264_01220at 290.109 kb on + strand, within CA264_01220at 290.110 kb on - strand, within CA264_01220at 290.132 kb on + strand, within CA264_01220at 290.132 kb on + strand, within CA264_01220at 290.132 kb on + strand, within CA264_01220at 290.133 kb on - strand, within CA264_01220at 290.149 kb on + strand, within CA264_01220at 290.150 kb on - strand, within CA264_01220at 290.150 kb on - strand, within CA264_01220at 290.152 kb on - strand, within CA264_01220at 290.152 kb on - strand, within CA264_01220at 290.200 kb on + strand, within CA264_01220at 290.200 kb on + strand, within CA264_01220at 290.201 kb on - strand, within CA264_01220at 290.201 kb on - strand, within CA264_01220at 290.202 kb on + strand, within CA264_01220at 290.202 kb on + strand, within CA264_01220at 290.203 kb on - strand, within CA264_01220at 290.849 kb on + strandat 290.855 kb on + strandat 290.858 kb on + strandat 290.858 kb on + strandat 290.859 kb on - strandat 290.862 kb on + strandat 290.862 kb on + strandat 290.862 kb on + strandat 290.863 kb on - strandat 290.863 kb on - strandat 290.863 kb on - strandat 290.884 kb on + strandat 290.885 kb on - strandat 290.920 kb on + strandat 290.927 kb on - strandat 290.928 kb on + strandat 290.928 kb on + strandat 290.929 kb on - strandat 290.969 kb on - strandat 290.979 kb on + strandat 290.979 kb on + strandat 291.015 kb on + strandat 291.074 kb on - strandat 291.152 kb on + strandat 291.153 kb on - strandat 291.153 kb on - strandat 291.155 kb on - strandat 291.384 kb on + strand, within CA264_01225at 291.385 kb on - strand, within CA264_01225at 291.385 kb on - strand, within CA264_01225at 291.494 kb on - strand, within CA264_01225at 291.574 kb on - strand, within CA264_01225at 291.661 kb on - strand, within CA264_01225at 291.748 kb on + strand, within CA264_01225

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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288,536 + -0.2
288,537 - -0.4
288,562 + -0.6
288,735 - -0.3
288,799 + -0.0
288,806 - +0.0
288,868 - +0.5
288,914 - -0.0
288,998 - +0.1
289,024 + -0.5
289,037 + -0.1
289,037 + -0.2
289,111 + +0.8
289,153 - +0.6
289,195 + CA264_01220 0.11 +0.0
289,344 + CA264_01220 0.19 -0.0
289,351 - CA264_01220 0.20 +0.6
289,385 + CA264_01220 0.22 +0.6
289,385 + CA264_01220 0.22 +0.2
289,385 - CA264_01220 0.22 -1.0
289,386 - CA264_01220 0.22 +0.3
289,386 - CA264_01220 0.22 -1.0
289,417 - CA264_01220 0.23 +0.4
289,425 + CA264_01220 0.24 +0.1
289,426 - CA264_01220 0.24 +0.2
289,426 - CA264_01220 0.24 -0.6
289,426 - CA264_01220 0.24 +0.3
289,449 + CA264_01220 0.25 +0.6
289,449 + CA264_01220 0.25 -1.0
289,476 + CA264_01220 0.27 -0.3
289,476 + CA264_01220 0.27 -0.2
289,508 + CA264_01220 0.28 +0.5
289,509 - CA264_01220 0.28 +0.4
289,511 - CA264_01220 0.29 +0.1
289,511 - CA264_01220 0.29 +0.1
289,511 - CA264_01220 0.29 +0.2
289,517 + CA264_01220 0.29 +2.6
289,537 + CA264_01220 0.30 +1.0
289,562 + CA264_01220 0.31 +0.7
289,562 + CA264_01220 0.31 -0.2
289,563 - CA264_01220 0.31 +1.0
289,563 - CA264_01220 0.31 -0.0
289,563 - CA264_01220 0.31 +1.5
289,567 + CA264_01220 0.32 -0.0
289,567 + CA264_01220 0.32 +0.4
289,567 + CA264_01220 0.32 -0.1
289,567 + CA264_01220 0.32 +0.3
289,568 - CA264_01220 0.32 -0.0
289,569 + CA264_01220 0.32 -0.0
289,569 + CA264_01220 0.32 +0.3
289,569 + CA264_01220 0.32 +0.0
289,570 - CA264_01220 0.32 -1.5
289,570 - CA264_01220 0.32 -1.0
289,570 - CA264_01220 0.32 +0.1
289,595 + CA264_01220 0.33 +0.7
289,595 + CA264_01220 0.33 +1.0
289,595 + CA264_01220 0.33 +0.4
289,595 + CA264_01220 0.33 -0.0
289,596 - CA264_01220 0.33 -1.2
289,596 - CA264_01220 0.33 -0.1
289,596 - CA264_01220 0.33 -0.1
289,596 - CA264_01220 0.33 -0.6
289,596 - CA264_01220 0.33 +0.2
289,598 + CA264_01220 0.33 -0.5
289,598 + CA264_01220 0.33 +0.1
289,598 + CA264_01220 0.33 -0.3
289,599 - CA264_01220 0.33 -0.9
289,599 - CA264_01220 0.33 +0.4
289,599 - CA264_01220 0.33 -0.7
289,603 - CA264_01220 0.34 +0.1
289,603 - CA264_01220 0.34 +0.4
289,603 - CA264_01220 0.34 +0.2
289,603 - CA264_01220 0.34 +0.6
289,606 + CA264_01220 0.34 +0.4
289,606 + CA264_01220 0.34 -0.0
289,606 + CA264_01220 0.34 +1.1
289,607 - CA264_01220 0.34 +0.2
289,654 + CA264_01220 0.37 -0.2
289,672 + CA264_01220 0.38 +0.3
289,684 + CA264_01220 0.38 -0.3
289,739 - CA264_01220 0.41 +0.6
289,741 - CA264_01220 0.41 +0.0
289,769 + CA264_01220 0.43 -0.1
289,769 + CA264_01220 0.43 +0.6
289,769 + CA264_01220 0.43 +2.0
289,770 - CA264_01220 0.43 -0.0
289,770 - CA264_01220 0.43 -0.5
289,770 - CA264_01220 0.43 +1.0
289,776 - CA264_01220 0.43 +0.1
289,776 - CA264_01220 0.43 -0.7
289,842 - CA264_01220 0.47 -0.6
289,842 - CA264_01220 0.47 -0.1
289,844 + CA264_01220 0.47 +1.6
289,845 - CA264_01220 0.47 -1.1
289,848 + CA264_01220 0.47 -0.0
289,848 + CA264_01220 0.47 -0.6
289,849 - CA264_01220 0.47 +0.1
289,849 - CA264_01220 0.47 +0.1
289,881 + CA264_01220 0.49 -1.0
289,881 + CA264_01220 0.49 +0.2
289,881 + CA264_01220 0.49 +1.5
289,891 - CA264_01220 0.50 -0.0
289,900 + CA264_01220 0.50 +0.7
289,901 - CA264_01220 0.50 +0.4
289,916 - CA264_01220 0.51 +1.2
289,935 + CA264_01220 0.52 -1.3
289,941 + CA264_01220 0.52 -0.0
290,017 + CA264_01220 0.57 +0.5
290,036 + CA264_01220 0.58 -0.4
290,036 + CA264_01220 0.58 -0.7
290,039 - CA264_01220 0.58 -0.0
290,039 - CA264_01220 0.58 +0.2
290,050 + CA264_01220 0.59 -0.2
290,050 + CA264_01220 0.59 +0.3
290,109 + CA264_01220 0.62 -0.6
290,110 - CA264_01220 0.62 +0.1
290,132 + CA264_01220 0.63 -1.6
290,132 + CA264_01220 0.63 -1.0
290,132 + CA264_01220 0.63 -0.7
290,133 - CA264_01220 0.63 -0.9
290,149 + CA264_01220 0.64 +0.1
290,150 - CA264_01220 0.64 +1.3
290,150 - CA264_01220 0.64 -0.1
290,152 - CA264_01220 0.64 -0.5
290,152 - CA264_01220 0.64 +1.3
290,200 + CA264_01220 0.67 +1.3
290,200 + CA264_01220 0.67 -0.6
290,201 - CA264_01220 0.67 -0.1
290,201 - CA264_01220 0.67 -0.2
290,202 + CA264_01220 0.67 +0.6
290,202 + CA264_01220 0.67 +0.0
290,203 - CA264_01220 0.67 +0.4
290,849 + +0.0
290,855 + -0.6
290,858 + +0.0
290,858 + -1.4
290,859 - +0.1
290,862 + -0.7
290,862 + -0.0
290,862 + +1.2
290,863 - +0.1
290,863 - -1.3
290,863 - +1.0
290,884 + +1.0
290,885 - -0.1
290,920 + -0.1
290,927 - -1.5
290,928 + -0.0
290,928 + -0.4
290,929 - -0.7
290,969 - +0.3
290,979 + +1.0
290,979 + -0.1
291,015 + +0.1
291,074 - -0.2
291,152 + -0.6
291,153 - -0.4
291,153 - -0.4
291,155 - +1.0
291,384 + CA264_01225 0.22 +0.2
291,385 - CA264_01225 0.22 +0.8
291,385 - CA264_01225 0.22 +0.1
291,494 - CA264_01225 0.28 +0.2
291,574 - CA264_01225 0.32 +0.3
291,661 - CA264_01225 0.37 +2.6
291,748 + CA264_01225 0.41 -1.0

Or see this region's nucleotide sequence