Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00775 and CA264_00780 are separated by 127 nucleotides CA264_00780 and CA264_00785 are separated by 146 nucleotides CA264_00785 and CA264_00790 are separated by 103 nucleotides CA264_00790 and CA264_00795 are separated by 77 nucleotides
CA264_00775: CA264_00775 - hypothetical protein, at 166,465 to 167,307
_00775
CA264_00780: CA264_00780 - glyoxalase, at 167,435 to 167,833
_00780
CA264_00785: CA264_00785 - hypothetical protein, at 167,980 to 169,044
_00785
CA264_00790: CA264_00790 - hypothetical protein, at 169,148 to 169,693
_00790
CA264_00795: CA264_00795 - hypothetical protein, at 169,771 to 171,078
_00795
Position (kb) 167
168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 166.984 kb on + strand, within CA264_00775 at 166.984 kb on + strand, within CA264_00775 at 166.988 kb on + strand, within CA264_00775 at 166.989 kb on - strand, within CA264_00775 at 167.122 kb on + strand, within CA264_00775 at 167.122 kb on + strand, within CA264_00775 at 167.127 kb on - strand, within CA264_00775 at 167.281 kb on + strand at 167.281 kb on + strand at 167.293 kb on + strand at 167.294 kb on - strand at 167.310 kb on - strand at 167.313 kb on + strand at 167.314 kb on - strand at 167.318 kb on + strand at 167.332 kb on + strand at 167.333 kb on - strand at 167.336 kb on - strand at 167.336 kb on - strand at 167.336 kb on - strand at 167.337 kb on + strand at 167.399 kb on - strand at 167.468 kb on + strand at 167.514 kb on + strand, within CA264_00780 at 167.521 kb on + strand, within CA264_00780 at 167.577 kb on + strand, within CA264_00780 at 167.578 kb on - strand, within CA264_00780 at 167.667 kb on + strand, within CA264_00780 at 167.861 kb on + strand at 167.883 kb on - strand at 167.883 kb on - strand at 167.904 kb on + strand at 167.981 kb on + strand at 168.021 kb on - strand at 168.021 kb on - strand at 168.025 kb on + strand at 168.026 kb on - strand at 168.027 kb on + strand at 168.083 kb on + strand at 168.089 kb on + strand, within CA264_00785 at 168.089 kb on + strand, within CA264_00785 at 168.168 kb on - strand, within CA264_00785 at 168.168 kb on - strand, within CA264_00785 at 168.178 kb on + strand, within CA264_00785 at 168.224 kb on + strand, within CA264_00785 at 168.225 kb on - strand, within CA264_00785 at 168.302 kb on + strand, within CA264_00785 at 168.345 kb on + strand, within CA264_00785 at 168.448 kb on - strand, within CA264_00785 at 168.509 kb on + strand, within CA264_00785 at 168.535 kb on - strand, within CA264_00785 at 168.641 kb on + strand, within CA264_00785 at 168.641 kb on + strand, within CA264_00785 at 168.656 kb on + strand, within CA264_00785 at 168.656 kb on + strand, within CA264_00785 at 168.690 kb on - strand, within CA264_00785 at 168.734 kb on + strand, within CA264_00785 at 168.734 kb on + strand, within CA264_00785 at 168.735 kb on - strand, within CA264_00785 at 168.743 kb on + strand, within CA264_00785 at 168.744 kb on - strand, within CA264_00785 at 168.753 kb on + strand, within CA264_00785 at 168.800 kb on + strand, within CA264_00785 at 168.837 kb on - strand, within CA264_00785 at 168.837 kb on - strand, within CA264_00785 at 168.837 kb on - strand, within CA264_00785 at 168.846 kb on + strand, within CA264_00785 at 168.866 kb on + strand, within CA264_00785 at 169.016 kb on - strand at 169.016 kb on - strand at 169.030 kb on - strand at 169.030 kb on - strand at 169.030 kb on - strand at 169.033 kb on + strand at 169.033 kb on + strand at 169.033 kb on + strand at 169.122 kb on - strand at 169.122 kb on - strand at 169.122 kb on - strand at 169.122 kb on - strand at 169.123 kb on + strand at 169.123 kb on + strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.124 kb on - strand at 169.146 kb on - strand at 169.149 kb on + strand at 169.150 kb on - strand at 169.154 kb on + strand at 169.157 kb on + strand at 169.157 kb on + strand at 169.158 kb on - strand at 169.176 kb on - strand at 169.176 kb on - strand at 169.192 kb on + strand at 169.247 kb on + strand, within CA264_00790 at 169.286 kb on - strand, within CA264_00790 at 169.317 kb on + strand, within CA264_00790 at 169.317 kb on + strand, within CA264_00790 at 169.317 kb on + strand, within CA264_00790 at 169.318 kb on - strand, within CA264_00790 at 169.327 kb on + strand, within CA264_00790 at 169.357 kb on - strand, within CA264_00790 at 169.427 kb on + strand, within CA264_00790 at 169.428 kb on - strand, within CA264_00790 at 169.454 kb on + strand, within CA264_00790 at 169.510 kb on - strand, within CA264_00790 at 169.559 kb on + strand, within CA264_00790 at 169.560 kb on - strand, within CA264_00790 at 169.572 kb on + strand, within CA264_00790 at 169.572 kb on + strand, within CA264_00790 at 169.573 kb on - strand, within CA264_00790 at 169.573 kb on - strand, within CA264_00790 at 169.607 kb on + strand, within CA264_00790 at 169.607 kb on + strand, within CA264_00790 at 169.678 kb on + strand at 169.714 kb on - strand at 169.717 kb on + strand at 169.721 kb on + strand at 169.721 kb on + strand at 169.721 kb on + strand at 169.721 kb on + strand at 169.722 kb on - strand at 169.722 kb on - strand at 169.722 kb on - strand at 169.726 kb on + strand at 169.727 kb on - strand at 169.727 kb on - strand at 169.728 kb on + strand at 169.728 kb on + strand at 169.728 kb on + strand at 169.729 kb on - strand at 169.729 kb on - strand at 169.730 kb on + strand at 169.731 kb on - strand at 169.731 kb on - strand at 169.731 kb on - strand at 169.731 kb on - strand at 169.773 kb on - strand at 169.773 kb on - strand at 169.773 kb on - strand at 169.791 kb on - strand at 169.804 kb on - strand at 169.816 kb on + strand at 169.897 kb on + strand at 169.898 kb on - strand at 169.898 kb on - strand at 169.898 kb on - strand at 169.973 kb on + strand, within CA264_00795 at 169.979 kb on - strand, within CA264_00795 at 169.994 kb on + strand, within CA264_00795
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 166,984 + CA264_00775 0.62 +0.8 166,984 + CA264_00775 0.62 +0.1 166,988 + CA264_00775 0.62 -0.3 166,989 - CA264_00775 0.62 -0.0 167,122 + CA264_00775 0.78 -0.4 167,122 + CA264_00775 0.78 -1.0 167,127 - CA264_00775 0.79 -0.0 167,281 + +0.7 167,281 + -1.5 167,293 + +0.1 167,294 - +0.9 167,310 - +0.4 167,313 + +1.1 167,314 - +0.2 167,318 + -0.1 167,332 + -0.1 167,333 - +1.0 167,336 - -1.3 167,336 - -0.0 167,336 - +1.0 167,337 + +1.0 167,399 - +0.1 167,468 + -0.4 167,514 + CA264_00780 0.20 +0.2 167,521 + CA264_00780 0.22 +0.2 167,577 + CA264_00780 0.36 +0.0 167,578 - CA264_00780 0.36 +2.8 167,667 + CA264_00780 0.58 +0.9 167,861 + +0.0 167,883 - +1.0 167,883 - +0.2 167,904 + +0.5 167,981 + +0.2 168,021 - +0.1 168,021 - +1.0 168,025 + +1.2 168,026 - +0.2 168,027 + -0.1 168,083 + -0.4 168,089 + CA264_00785 0.10 -0.2 168,089 + CA264_00785 0.10 +1.3 168,168 - CA264_00785 0.18 +0.1 168,168 - CA264_00785 0.18 +0.1 168,178 + CA264_00785 0.19 -0.2 168,224 + CA264_00785 0.23 -0.1 168,225 - CA264_00785 0.23 -0.1 168,302 + CA264_00785 0.30 -0.0 168,345 + CA264_00785 0.34 -0.9 168,448 - CA264_00785 0.44 +0.1 168,509 + CA264_00785 0.50 -0.3 168,535 - CA264_00785 0.52 -0.1 168,641 + CA264_00785 0.62 -1.6 168,641 + CA264_00785 0.62 +1.2 168,656 + CA264_00785 0.63 +0.0 168,656 + CA264_00785 0.63 +0.2 168,690 - CA264_00785 0.67 +0.1 168,734 + CA264_00785 0.71 +1.0 168,734 + CA264_00785 0.71 +0.2 168,735 - CA264_00785 0.71 -0.3 168,743 + CA264_00785 0.72 -0.2 168,744 - CA264_00785 0.72 +0.1 168,753 + CA264_00785 0.73 -0.8 168,800 + CA264_00785 0.77 +0.1 168,837 - CA264_00785 0.80 -0.8 168,837 - CA264_00785 0.80 -0.0 168,837 - CA264_00785 0.80 -1.1 168,846 + CA264_00785 0.81 -0.4 168,866 + CA264_00785 0.83 +0.2 169,016 - -1.8 169,016 - -0.0 169,030 - -0.0 169,030 - -0.1 169,030 - -0.7 169,033 + +1.4 169,033 + -0.2 169,033 + +2.0 169,122 - +0.1 169,122 - -0.9 169,122 - +0.0 169,122 - -0.5 169,123 + +0.5 169,123 + -0.3 169,124 - +0.3 169,124 - +0.7 169,124 - +0.2 169,124 - -0.1 169,124 - +0.1 169,146 - +0.3 169,149 + -0.7 169,150 - +0.4 169,154 + -0.6 169,157 + -0.8 169,157 + -1.0 169,158 - +1.4 169,176 - +0.6 169,176 - +1.0 169,192 + +0.2 169,247 + CA264_00790 0.18 -0.5 169,286 - CA264_00790 0.25 +1.4 169,317 + CA264_00790 0.31 -0.8 169,317 + CA264_00790 0.31 -0.9 169,317 + CA264_00790 0.31 +0.4 169,318 - CA264_00790 0.31 -0.1 169,327 + CA264_00790 0.33 +0.2 169,357 - CA264_00790 0.38 +0.6 169,427 + CA264_00790 0.51 -0.2 169,428 - CA264_00790 0.51 +0.1 169,454 + CA264_00790 0.56 -0.2 169,510 - CA264_00790 0.66 -0.3 169,559 + CA264_00790 0.75 -0.2 169,560 - CA264_00790 0.75 -1.8 169,572 + CA264_00790 0.78 -0.8 169,572 + CA264_00790 0.78 +0.4 169,573 - CA264_00790 0.78 -0.5 169,573 - CA264_00790 0.78 +0.3 169,607 + CA264_00790 0.84 -2.0 169,607 + CA264_00790 0.84 +0.2 169,678 + +1.3 169,714 - -0.8 169,717 + -1.7 169,721 + +0.4 169,721 + +0.1 169,721 + +0.5 169,721 + -0.3 169,722 - -0.4 169,722 - -0.1 169,722 - +0.3 169,726 + -0.3 169,727 - +0.1 169,727 - +0.3 169,728 + -0.8 169,728 + -1.0 169,728 + +0.2 169,729 - +0.5 169,729 - +1.5 169,730 + +0.1 169,731 - -0.3 169,731 - -0.1 169,731 - -0.3 169,731 - -1.8 169,773 - +0.4 169,773 - +0.2 169,773 - -0.9 169,791 - -0.2 169,804 - -0.1 169,816 + -0.2 169,897 + +0.6 169,898 - +0.3 169,898 - +0.4 169,898 - -0.4 169,973 + CA264_00795 0.15 -2.0 169,979 - CA264_00795 0.16 +1.2 169,994 + CA264_00795 0.17 -0.0
Or see this region's nucleotide sequence