Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00770 and CA264_00775 are separated by 69 nucleotides CA264_00775 and CA264_00780 are separated by 127 nucleotides CA264_00780 and CA264_00785 are separated by 146 nucleotides
CA264_00770: CA264_00770 - prolipoprotein diacylglyceryl transferase, at 165,544 to 166,395
_00770
CA264_00775: CA264_00775 - hypothetical protein, at 166,465 to 167,307
_00775
CA264_00780: CA264_00780 - glyoxalase, at 167,435 to 167,833
_00780
CA264_00785: CA264_00785 - hypothetical protein, at 167,980 to 169,044
_00785
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 165.467 kb on + strand at 165.468 kb on - strand at 165.490 kb on + strand at 165.491 kb on - strand at 165.530 kb on + strand at 165.530 kb on + strand at 165.531 kb on - strand at 165.531 kb on - strand at 166.394 kb on - strand at 166.410 kb on + strand at 166.467 kb on - strand at 166.467 kb on - strand at 166.578 kb on - strand, within CA264_00775 at 166.589 kb on + strand, within CA264_00775 at 166.589 kb on + strand, within CA264_00775 at 166.589 kb on + strand, within CA264_00775 at 166.590 kb on - strand, within CA264_00775 at 166.609 kb on - strand, within CA264_00775 at 166.609 kb on - strand, within CA264_00775 at 166.700 kb on - strand, within CA264_00775 at 166.730 kb on + strand, within CA264_00775 at 166.802 kb on + strand, within CA264_00775 at 166.802 kb on + strand, within CA264_00775 at 166.803 kb on - strand, within CA264_00775 at 166.804 kb on + strand, within CA264_00775 at 166.804 kb on + strand, within CA264_00775 at 166.804 kb on + strand, within CA264_00775 at 166.804 kb on + strand, within CA264_00775 at 166.805 kb on - strand, within CA264_00775 at 166.886 kb on + strand, within CA264_00775 at 166.887 kb on - strand, within CA264_00775 at 166.984 kb on + strand, within CA264_00775 at 166.984 kb on + strand, within CA264_00775 at 166.988 kb on + strand, within CA264_00775 at 166.989 kb on - strand, within CA264_00775 at 167.122 kb on + strand, within CA264_00775 at 167.122 kb on + strand, within CA264_00775 at 167.127 kb on - strand, within CA264_00775 at 167.281 kb on + strand at 167.281 kb on + strand at 167.293 kb on + strand at 167.294 kb on - strand at 167.310 kb on - strand at 167.313 kb on + strand at 167.314 kb on - strand at 167.318 kb on + strand at 167.332 kb on + strand at 167.333 kb on - strand at 167.336 kb on - strand at 167.336 kb on - strand at 167.336 kb on - strand at 167.337 kb on + strand at 167.399 kb on - strand at 167.468 kb on + strand at 167.514 kb on + strand, within CA264_00780 at 167.521 kb on + strand, within CA264_00780 at 167.577 kb on + strand, within CA264_00780 at 167.578 kb on - strand, within CA264_00780 at 167.667 kb on + strand, within CA264_00780 at 167.861 kb on + strand at 167.883 kb on - strand at 167.883 kb on - strand at 167.904 kb on + strand at 167.981 kb on + strand at 168.021 kb on - strand at 168.021 kb on - strand at 168.025 kb on + strand at 168.026 kb on - strand at 168.027 kb on + strand at 168.083 kb on + strand at 168.089 kb on + strand, within CA264_00785 at 168.089 kb on + strand, within CA264_00785 at 168.168 kb on - strand, within CA264_00785 at 168.168 kb on - strand, within CA264_00785 at 168.178 kb on + strand, within CA264_00785 at 168.224 kb on + strand, within CA264_00785 at 168.225 kb on - strand, within CA264_00785 at 168.302 kb on + strand, within CA264_00785
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 165,467 + -1.3 165,468 - +0.5 165,490 + -0.5 165,491 - -0.8 165,530 + +0.3 165,530 + +0.0 165,531 - -0.1 165,531 - +0.4 166,394 - +0.4 166,410 + -0.0 166,467 - -0.2 166,467 - -1.4 166,578 - CA264_00775 0.13 +0.1 166,589 + CA264_00775 0.15 +0.8 166,589 + CA264_00775 0.15 +1.9 166,589 + CA264_00775 0.15 -1.7 166,590 - CA264_00775 0.15 +0.5 166,609 - CA264_00775 0.17 -0.4 166,609 - CA264_00775 0.17 -0.2 166,700 - CA264_00775 0.28 +0.1 166,730 + CA264_00775 0.31 +0.5 166,802 + CA264_00775 0.40 -1.8 166,802 + CA264_00775 0.40 +0.0 166,803 - CA264_00775 0.40 +0.4 166,804 + CA264_00775 0.40 -1.1 166,804 + CA264_00775 0.40 -0.6 166,804 + CA264_00775 0.40 +1.4 166,804 + CA264_00775 0.40 +1.5 166,805 - CA264_00775 0.40 +0.6 166,886 + CA264_00775 0.50 -2.5 166,887 - CA264_00775 0.50 +0.1 166,984 + CA264_00775 0.62 +0.8 166,984 + CA264_00775 0.62 +0.1 166,988 + CA264_00775 0.62 -0.3 166,989 - CA264_00775 0.62 -0.0 167,122 + CA264_00775 0.78 -0.4 167,122 + CA264_00775 0.78 -1.0 167,127 - CA264_00775 0.79 -0.0 167,281 + +0.7 167,281 + -1.5 167,293 + +0.1 167,294 - +0.9 167,310 - +0.4 167,313 + +1.1 167,314 - +0.2 167,318 + -0.1 167,332 + -0.1 167,333 - +1.0 167,336 - -1.3 167,336 - -0.0 167,336 - +1.0 167,337 + +1.0 167,399 - +0.1 167,468 + -0.4 167,514 + CA264_00780 0.20 +0.2 167,521 + CA264_00780 0.22 +0.2 167,577 + CA264_00780 0.36 +0.0 167,578 - CA264_00780 0.36 +2.8 167,667 + CA264_00780 0.58 +0.9 167,861 + +0.0 167,883 - +1.0 167,883 - +0.2 167,904 + +0.5 167,981 + +0.2 168,021 - +0.1 168,021 - +1.0 168,025 + +1.2 168,026 - +0.2 168,027 + -0.1 168,083 + -0.4 168,089 + CA264_00785 0.10 -0.2 168,089 + CA264_00785 0.10 +1.3 168,168 - CA264_00785 0.18 +0.1 168,168 - CA264_00785 0.18 +0.1 168,178 + CA264_00785 0.19 -0.2 168,224 + CA264_00785 0.23 -0.1 168,225 - CA264_00785 0.23 -0.1 168,302 + CA264_00785 0.30 -0.0
Or see this region's nucleotide sequence