Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00715

Experiment: marine_broth_2216 with nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_00705 and CA264_00710 are separated by 69 nucleotidesCA264_00710 and CA264_00715 are separated by 9 nucleotidesCA264_00715 and CA264_00720 are separated by 195 nucleotidesCA264_00720 and CA264_00725 are separated by 391 nucleotides CA264_00705: CA264_00705 - hypothetical protein, at 153,478 to 153,810 _00705 CA264_00710: CA264_00710 - hypothetical protein, at 153,880 to 154,635 _00710 CA264_00715: CA264_00715 - hypothetical protein, at 154,645 to 155,742 _00715 CA264_00720: CA264_00720 - 30S ribosomal protein S20, at 155,938 to 156,195 _00720 CA264_00725: CA264_00725 - pyruvate kinase, at 156,587 to 158,014 _00725 Position (kb) 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2at 153.752 kb on + strand, within CA264_00705at 153.753 kb on - strand, within CA264_00705at 153.753 kb on - strand, within CA264_00705at 153.792 kb on + strandat 153.792 kb on + strandat 153.793 kb on - strandat 153.817 kb on + strandat 153.871 kb on + strandat 153.887 kb on - strandat 154.092 kb on - strand, within CA264_00710at 154.149 kb on - strand, within CA264_00710at 154.149 kb on - strand, within CA264_00710at 154.174 kb on - strand, within CA264_00710at 154.286 kb on + strand, within CA264_00710at 154.314 kb on + strand, within CA264_00710at 154.315 kb on - strand, within CA264_00710at 154.370 kb on + strand, within CA264_00710at 154.415 kb on + strand, within CA264_00710at 154.416 kb on - strand, within CA264_00710at 154.416 kb on - strand, within CA264_00710at 154.423 kb on - strand, within CA264_00710at 154.642 kb on + strandat 154.643 kb on - strandat 154.756 kb on - strand, within CA264_00715at 154.780 kb on + strand, within CA264_00715at 154.782 kb on + strand, within CA264_00715at 154.810 kb on - strand, within CA264_00715at 154.811 kb on + strand, within CA264_00715at 154.811 kb on + strand, within CA264_00715at 154.812 kb on - strand, within CA264_00715at 154.830 kb on - strand, within CA264_00715at 154.830 kb on - strand, within CA264_00715at 154.877 kb on + strand, within CA264_00715at 154.877 kb on + strand, within CA264_00715at 154.877 kb on + strand, within CA264_00715at 154.877 kb on + strand, within CA264_00715at 154.877 kb on + strand, within CA264_00715at 154.878 kb on - strand, within CA264_00715at 154.878 kb on - strand, within CA264_00715at 154.878 kb on - strand, within CA264_00715at 154.977 kb on + strand, within CA264_00715at 155.097 kb on + strand, within CA264_00715at 155.142 kb on - strand, within CA264_00715at 155.150 kb on + strand, within CA264_00715at 155.169 kb on + strand, within CA264_00715at 155.170 kb on - strand, within CA264_00715at 155.204 kb on - strand, within CA264_00715at 155.308 kb on + strand, within CA264_00715at 155.319 kb on + strand, within CA264_00715at 155.320 kb on - strand, within CA264_00715at 155.320 kb on - strand, within CA264_00715at 155.598 kb on + strand, within CA264_00715at 155.598 kb on + strand, within CA264_00715at 155.598 kb on + strand, within CA264_00715at 155.659 kb on + strandat 155.727 kb on - strandat 155.730 kb on + strandat 155.743 kb on - strandat 155.788 kb on - strandat 155.822 kb on + strandat 155.822 kb on + strandat 155.823 kb on - strandat 156.193 kb on + strandat 156.230 kb on + strandat 156.277 kb on + strandat 156.283 kb on + strandat 156.284 kb on - strandat 156.330 kb on + strandat 156.401 kb on - strandat 156.413 kb on + strandat 156.414 kb on - strandat 156.414 kb on - strandat 156.417 kb on + strandat 156.418 kb on - strandat 156.424 kb on + strandat 156.506 kb on - strandat 156.516 kb on - strandat 156.519 kb on - strandat 156.520 kb on + strandat 156.521 kb on - strandat 156.521 kb on - strandat 156.564 kb on + strandat 156.569 kb on + strandat 156.570 kb on - strandat 156.570 kb on - strandat 156.570 kb on - strandat 156.599 kb on + strandat 156.599 kb on + strandat 156.600 kb on - strandat 156.673 kb on + strandat 156.673 kb on + strandat 156.674 kb on - strandat 156.679 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
remove
153,752 + CA264_00705 0.82 +0.4
153,753 - CA264_00705 0.83 -0.6
153,753 - CA264_00705 0.83 -0.2
153,792 + +0.3
153,792 + +0.2
153,793 - +0.1
153,817 + -0.6
153,871 + +0.4
153,887 - -0.0
154,092 - CA264_00710 0.28 -1.6
154,149 - CA264_00710 0.36 +0.2
154,149 - CA264_00710 0.36 -1.0
154,174 - CA264_00710 0.39 -0.6
154,286 + CA264_00710 0.54 +0.6
154,314 + CA264_00710 0.57 -0.0
154,315 - CA264_00710 0.58 -0.0
154,370 + CA264_00710 0.65 +0.6
154,415 + CA264_00710 0.71 +2.5
154,416 - CA264_00710 0.71 -0.1
154,416 - CA264_00710 0.71 +1.0
154,423 - CA264_00710 0.72 -0.7
154,642 + -0.3
154,643 - +0.0
154,756 - CA264_00715 0.10 -0.2
154,780 + CA264_00715 0.12 -0.5
154,782 + CA264_00715 0.12 -1.6
154,810 - CA264_00715 0.15 -0.2
154,811 + CA264_00715 0.15 -0.6
154,811 + CA264_00715 0.15 +1.0
154,812 - CA264_00715 0.15 +0.1
154,830 - CA264_00715 0.17 -1.0
154,830 - CA264_00715 0.17 +1.0
154,877 + CA264_00715 0.21 +0.3
154,877 + CA264_00715 0.21 -0.7
154,877 + CA264_00715 0.21 +0.2
154,877 + CA264_00715 0.21 +0.2
154,877 + CA264_00715 0.21 +0.1
154,878 - CA264_00715 0.21 -0.2
154,878 - CA264_00715 0.21 -0.1
154,878 - CA264_00715 0.21 -0.4
154,977 + CA264_00715 0.30 +1.8
155,097 + CA264_00715 0.41 +0.1
155,142 - CA264_00715 0.45 -0.3
155,150 + CA264_00715 0.46 +1.0
155,169 + CA264_00715 0.48 +2.0
155,170 - CA264_00715 0.48 -0.4
155,204 - CA264_00715 0.51 -0.7
155,308 + CA264_00715 0.60 +0.6
155,319 + CA264_00715 0.61 +0.2
155,320 - CA264_00715 0.61 +1.4
155,320 - CA264_00715 0.61 +0.1
155,598 + CA264_00715 0.87 +1.0
155,598 + CA264_00715 0.87 +0.5
155,598 + CA264_00715 0.87 +0.5
155,659 + -0.4
155,727 - -2.2
155,730 + +1.0
155,743 - +0.7
155,788 - -0.1
155,822 + +1.5
155,822 + +0.2
155,823 - -0.5
156,193 + +0.5
156,230 + -0.5
156,277 + +1.0
156,283 + -1.2
156,284 - +0.2
156,330 + +0.3
156,401 - +2.0
156,413 + +0.3
156,414 - +1.0
156,414 - -0.4
156,417 + -0.3
156,418 - -0.8
156,424 + -0.3
156,506 - +0.6
156,516 - +1.0
156,519 - -0.6
156,520 + -0.6
156,521 - -0.0
156,521 - +1.3
156,564 + -0.5
156,569 + -0.3
156,570 - +0.9
156,570 - +0.1
156,570 - +1.1
156,599 + -1.7
156,599 + -1.3
156,600 - +1.4
156,673 + -1.4
156,673 + -2.0
156,674 - -0.0
156,679 - +2.3

Or see this region's nucleotide sequence