Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28255 and PS417_28260 are separated by 293 nucleotides PS417_28260 and PS417_28265 are separated by 125 nucleotides PS417_28265 and PS417_28270 are separated by 117 nucleotides PS417_28270 and PS417_28275 overlap by 7 nucleotides
PS417_28255: PS417_28255 - potassium transporter, at 6,102,500 to 6,104,263
_28255
PS417_28260: PS417_28260 - VdlD, at 6,104,557 to 6,105,033
_28260
PS417_28265: PS417_28265 - pyridoxamine kinase, at 6,105,159 to 6,106,031
_28265
PS417_28270: PS417_28270 - hypothetical protein, at 6,106,149 to 6,106,544
_28270
PS417_28275: PS417_28275 - cobalamin biosynthesis protein CobW, at 6,106,538 to 6,107,500
_28275
Position (kb)
6105
6106
6107 Strain fitness (log2 ratio)
-1
0
1
2 at 6104.161 kb on - strand at 6104.161 kb on - strand at 6104.161 kb on - strand at 6104.161 kb on - strand at 6104.161 kb on - strand at 6104.161 kb on - strand at 6104.284 kb on + strand at 6104.359 kb on + strand at 6104.392 kb on - strand at 6104.425 kb on + strand at 6104.425 kb on + strand at 6104.425 kb on + strand at 6104.425 kb on + strand at 6104.426 kb on - strand at 6104.427 kb on + strand at 6104.428 kb on - strand at 6104.428 kb on - strand at 6104.428 kb on - strand at 6104.538 kb on + strand at 6104.539 kb on - strand at 6104.539 kb on - strand at 6104.556 kb on + strand at 6104.625 kb on + strand, within PS417_28260 at 6104.626 kb on - strand, within PS417_28260 at 6104.653 kb on + strand, within PS417_28260 at 6104.653 kb on + strand, within PS417_28260 at 6104.671 kb on + strand, within PS417_28260 at 6104.671 kb on + strand, within PS417_28260 at 6104.701 kb on + strand, within PS417_28260 at 6104.701 kb on + strand, within PS417_28260 at 6104.788 kb on + strand, within PS417_28260 at 6104.789 kb on - strand, within PS417_28260 at 6104.789 kb on - strand, within PS417_28260 at 6104.789 kb on - strand, within PS417_28260 at 6104.862 kb on + strand, within PS417_28260 at 6104.907 kb on + strand, within PS417_28260 at 6105.160 kb on + strand at 6105.160 kb on + strand at 6105.160 kb on + strand at 6105.160 kb on + strand at 6105.162 kb on + strand at 6105.222 kb on + strand at 6105.222 kb on + strand at 6105.701 kb on - strand, within PS417_28265 at 6105.701 kb on - strand, within PS417_28265 at 6106.075 kb on - strand at 6106.082 kb on + strand at 6106.313 kb on - strand, within PS417_28270 at 6106.313 kb on - strand, within PS417_28270 at 6106.360 kb on - strand, within PS417_28270 at 6106.501 kb on + strand, within PS417_28270 at 6106.944 kb on - strand, within PS417_28275 at 6106.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 6,104,161 - +1.0 6,104,161 - -0.3 6,104,161 - -0.0 6,104,161 - -0.4 6,104,161 - -0.5 6,104,161 - +0.4 6,104,284 + -0.2 6,104,359 + -0.4 6,104,392 - +0.0 6,104,425 + +0.5 6,104,425 + -0.4 6,104,425 + +0.4 6,104,425 + +2.1 6,104,426 - -1.5 6,104,427 + +0.1 6,104,428 - -0.2 6,104,428 - +0.5 6,104,428 - -0.3 6,104,538 + +0.1 6,104,539 - +0.2 6,104,539 - -0.6 6,104,556 + -0.3 6,104,625 + PS417_28260 0.14 +0.0 6,104,626 - PS417_28260 0.14 +0.4 6,104,653 + PS417_28260 0.20 -0.3 6,104,653 + PS417_28260 0.20 -0.4 6,104,671 + PS417_28260 0.24 -1.1 6,104,671 + PS417_28260 0.24 +0.2 6,104,701 + PS417_28260 0.30 +0.6 6,104,701 + PS417_28260 0.30 -0.1 6,104,788 + PS417_28260 0.48 -0.1 6,104,789 - PS417_28260 0.49 +0.2 6,104,789 - PS417_28260 0.49 -0.6 6,104,789 - PS417_28260 0.49 -0.5 6,104,862 + PS417_28260 0.64 -0.5 6,104,907 + PS417_28260 0.73 -0.2 6,105,160 + +0.1 6,105,160 + +0.2 6,105,160 + -0.1 6,105,160 + -0.4 6,105,162 + +2.6 6,105,222 + -0.5 6,105,222 + -1.0 6,105,701 - PS417_28265 0.62 -0.9 6,105,701 - PS417_28265 0.62 -0.5 6,106,075 - +0.3 6,106,082 + +1.2 6,106,313 - PS417_28270 0.41 -0.0 6,106,313 - PS417_28270 0.41 +0.4 6,106,360 - PS417_28270 0.53 -0.1 6,106,501 + PS417_28270 0.89 +0.4 6,106,944 - PS417_28275 0.42 +0.0 6,106,966 - -0.4
Or see this region's nucleotide sequence