Strain Fitness in Pseudomonas simiae WCS417 around PS417_28080

Experiment: Phosphomycin 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_28075 and PS417_28080 are separated by 15 nucleotidesPS417_28080 and PS417_28085 are separated by 132 nucleotides PS417_28075: PS417_28075 - phosphate ABC transporter permease, at 6,057,413 to 6,059,083 _28075 PS417_28080: PS417_28080 - phosphate ABC transporter permease, at 6,059,099 to 6,061,384 _28080 PS417_28085: PS417_28085 - phosphate-binding protein, at 6,061,517 to 6,062,503 _28085 Position (kb) 6059 6060 6061 6062Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9at 6058.237 kb on - strand, within PS417_28075at 6058.564 kb on + strandat 6058.659 kb on + strand, within PS417_28075at 6058.891 kb on + strand, within PS417_28075at 6058.892 kb on - strand, within PS417_28075at 6058.917 kb on + strandat 6058.918 kb on - strandat 6059.091 kb on + strandat 6059.092 kb on - strandat 6059.100 kb on + strandat 6059.100 kb on + strandat 6059.502 kb on + strand, within PS417_28080at 6059.502 kb on + strand, within PS417_28080at 6059.502 kb on + strand, within PS417_28080at 6059.502 kb on + strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.503 kb on - strand, within PS417_28080at 6059.565 kb on + strand, within PS417_28080at 6059.643 kb on + strand, within PS417_28080at 6059.644 kb on - strand, within PS417_28080at 6059.644 kb on - strand, within PS417_28080at 6059.938 kb on - strand, within PS417_28080at 6060.073 kb on - strand, within PS417_28080at 6060.073 kb on - strand, within PS417_28080at 6060.073 kb on - strand, within PS417_28080at 6060.073 kb on - strand, within PS417_28080at 6060.073 kb on - strandat 6060.073 kb on - strand, within PS417_28080at 6060.591 kb on + strand, within PS417_28080at 6060.591 kb on + strand, within PS417_28080at 6060.592 kb on - strand, within PS417_28080at 6060.592 kb on - strand, within PS417_28080at 6060.889 kb on + strand, within PS417_28080at 6060.889 kb on + strand, within PS417_28080at 6060.890 kb on - strand, within PS417_28080at 6060.890 kb on - strand, within PS417_28080at 6060.890 kb on - strand, within PS417_28080at 6060.891 kb on + strand, within PS417_28080at 6060.891 kb on + strand, within PS417_28080at 6060.891 kb on + strand, within PS417_28080at 6060.891 kb on + strandat 6060.891 kb on + strand, within PS417_28080at 6060.892 kb on - strandat 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6060.892 kb on - strand, within PS417_28080at 6061.039 kb on + strand, within PS417_28080at 6061.039 kb on + strand, within PS417_28080at 6061.198 kb on - strandat 6061.260 kb on + strandat 6061.260 kb on + strandat 6061.260 kb on + strandat 6061.260 kb on + strandat 6061.261 kb on - strandat 6061.261 kb on - strandat 6061.584 kb on + strandat 6061.584 kb on + strandat 6061.714 kb on - strand, within PS417_28085at 6061.714 kb on - strand, within PS417_28085at 6061.806 kb on + strand, within PS417_28085at 6061.806 kb on + strand, within PS417_28085at 6061.900 kb on - strand, within PS417_28085at 6061.900 kb on - strand, within PS417_28085at 6061.900 kb on - strand, within PS417_28085at 6061.932 kb on + strand, within PS417_28085at 6061.932 kb on + strand, within PS417_28085at 6061.933 kb on - strand, within PS417_28085at 6061.939 kb on - strand, within PS417_28085at 6061.939 kb on - strand, within PS417_28085at 6062.163 kb on + strand, within PS417_28085at 6062.163 kb on + strand, within PS417_28085at 6062.164 kb on - strand, within PS417_28085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml
remove
6,058,237 - PS417_28075 0.49 +8.1
6,058,564 + +6.9
6,058,659 + PS417_28075 0.75 +7.1
6,058,891 + PS417_28075 0.88 +6.8
6,058,892 - PS417_28075 0.89 +8.8
6,058,917 + +6.9
6,058,918 - +8.9
6,059,091 + +9.2
6,059,092 - +9.1
6,059,100 + +7.5
6,059,100 + +7.1
6,059,502 + PS417_28080 0.18 +7.2
6,059,502 + PS417_28080 0.18 +7.4
6,059,502 + PS417_28080 0.18 +7.4
6,059,502 + PS417_28080 0.18 +7.3
6,059,503 - PS417_28080 0.18 +8.8
6,059,503 - PS417_28080 0.18 +6.9
6,059,503 - PS417_28080 0.18 +8.2
6,059,503 - PS417_28080 0.18 +8.7
6,059,503 - PS417_28080 0.18 +8.9
6,059,503 - PS417_28080 0.18 +8.8
6,059,565 + PS417_28080 0.20 +7.1
6,059,643 + PS417_28080 0.24 +7.5
6,059,644 - PS417_28080 0.24 +9.4
6,059,644 - PS417_28080 0.24 +8.9
6,059,938 - PS417_28080 0.37 +9.2
6,060,073 - PS417_28080 0.43 +8.8
6,060,073 - PS417_28080 0.43 +8.3
6,060,073 - PS417_28080 0.43 +8.1
6,060,073 - PS417_28080 0.43 +8.8
6,060,073 - +9.2
6,060,073 - PS417_28080 0.43 +8.5
6,060,591 + PS417_28080 0.65 +7.0
6,060,591 + PS417_28080 0.65 +7.3
6,060,592 - PS417_28080 0.65 +7.0
6,060,592 - PS417_28080 0.65 +5.6
6,060,889 + PS417_28080 0.78 +7.2
6,060,889 + PS417_28080 0.78 +7.2
6,060,890 - PS417_28080 0.78 +7.1
6,060,890 - PS417_28080 0.78 +6.7
6,060,890 - PS417_28080 0.78 +7.2
6,060,891 + PS417_28080 0.78 +7.0
6,060,891 + PS417_28080 0.78 +6.9
6,060,891 + PS417_28080 0.78 +6.2
6,060,891 + +6.1
6,060,891 + PS417_28080 0.78 +7.1
6,060,892 - +6.5
6,060,892 - PS417_28080 0.78 +7.5
6,060,892 - PS417_28080 0.78 +7.9
6,060,892 - PS417_28080 0.78 +7.3
6,060,892 - PS417_28080 0.78 +7.4
6,060,892 - PS417_28080 0.78 +7.2
6,060,892 - PS417_28080 0.78 +6.6
6,060,892 - PS417_28080 0.78 +7.6
6,060,892 - PS417_28080 0.78 +7.6
6,060,892 - PS417_28080 0.78 +7.4
6,061,039 + PS417_28080 0.85 +7.3
6,061,039 + PS417_28080 0.85 +7.2
6,061,198 - +6.8
6,061,260 + +1.2
6,061,260 + +6.2
6,061,260 + +7.1
6,061,260 + +7.5
6,061,261 - +7.6
6,061,261 - +8.4
6,061,584 + +9.2
6,061,584 + +8.9
6,061,714 - PS417_28085 0.20 +8.0
6,061,714 - PS417_28085 0.20 +7.9
6,061,806 + PS417_28085 0.29 +7.6
6,061,806 + PS417_28085 0.29 +8.6
6,061,900 - PS417_28085 0.39 +7.9
6,061,900 - PS417_28085 0.39 +8.4
6,061,900 - PS417_28085 0.39 +7.7
6,061,932 + PS417_28085 0.42 +8.5
6,061,932 + PS417_28085 0.42 +8.1
6,061,933 - PS417_28085 0.42 +8.1
6,061,939 - PS417_28085 0.43 +8.7
6,061,939 - PS417_28085 0.43 +8.4
6,062,163 + PS417_28085 0.65 +8.8
6,062,163 + PS417_28085 0.65 +7.3
6,062,164 - PS417_28085 0.66 +7.8

Or see this region's nucleotide sequence