Strain Fitness in Pseudomonas simiae WCS417 around PS417_27820

Experiment: Phosphomycin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27815 and PS417_27820 are separated by 10 nucleotidesPS417_27820 and PS417_27825 are separated by 167 nucleotidesPS417_27825 and PS417_27830 are separated by 60 nucleotides PS417_27815: PS417_27815 - hypothetical protein, at 5,997,097 to 5,997,960 _27815 PS417_27820: PS417_27820 - guanylate kinase, at 5,997,971 to 5,998,591 _27820 PS417_27825: PS417_27825 - DNA-directed RNA polymerase subunit omega, at 5,998,759 to 5,999,022 _27825 PS417_27830: PS417_27830 - (p)ppGpp synthetase, at 5,999,083 to 6,001,188 _27830 Position (kb) 5997 5998 5999Strain fitness (log2 ratio) -1 0 1 2 3at 5996.984 kb on - strandat 5997.036 kb on - strandat 5997.053 kb on + strandat 5997.264 kb on + strand, within PS417_27815at 5997.264 kb on + strandat 5997.858 kb on + strand, within PS417_27815at 5997.858 kb on + strand, within PS417_27815at 5998.623 kb on + strandat 5998.623 kb on + strandat 5998.623 kb on + strandat 5998.624 kb on - strandat 5999.026 kb on + strandat 5999.026 kb on + strandat 5999.026 kb on + strandat 5999.026 kb on + strandat 5999.026 kb on + strandat 5999.041 kb on + strandat 5999.093 kb on + strandat 5999.093 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml
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5,996,984 - +1.4
5,997,036 - +0.2
5,997,053 + +0.0
5,997,264 + PS417_27815 0.19 -0.1
5,997,264 + +3.2
5,997,858 + PS417_27815 0.88 +2.2
5,997,858 + PS417_27815 0.88 +0.6
5,998,623 + -0.0
5,998,623 + -1.1
5,998,623 + -0.8
5,998,624 - +2.8
5,999,026 + +1.2
5,999,026 + -0.5
5,999,026 + -0.2
5,999,026 + +0.0
5,999,026 + -0.3
5,999,041 + +0.1
5,999,093 + -0.6
5,999,093 + +0.7

Or see this region's nucleotide sequence