Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27025 and PS417_27030 are separated by 243 nucleotides PS417_27030 and PS417_27035 are separated by 21 nucleotides PS417_27035 and PS417_27040 are separated by 205 nucleotides
PS417_27025: PS417_27025 - DNA-binding protein, at 5,835,833 to 5,836,759
_27025
PS417_27030: PS417_27030 - hypothetical protein, at 5,837,003 to 5,837,668
_27030
PS417_27035: PS417_27035 - FAD-linked oxidase, at 5,837,690 to 5,839,084
_27035
PS417_27040: PS417_27040 - 3-phosphoglycerate dehydrogenase, at 5,839,290 to 5,840,519
_27040
Position (kb)
5837
5838
5839
5840 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 5836.787 kb on + strand at 5836.788 kb on - strand at 5836.890 kb on - strand at 5837.594 kb on - strand, within PS417_27030 at 5837.649 kb on + strand at 5837.649 kb on + strand at 5837.649 kb on + strand at 5837.649 kb on + strand at 5837.649 kb on + strand at 5837.649 kb on + strand at 5837.649 kb on + strand at 5837.650 kb on - strand at 5837.650 kb on - strand at 5837.662 kb on - strand at 5837.760 kb on + strand at 5837.787 kb on + strand at 5838.511 kb on + strand, within PS417_27035 at 5838.703 kb on - strand, within PS417_27035 at 5838.805 kb on + strand, within PS417_27035 at 5838.805 kb on + strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5839.055 kb on + strand at 5839.055 kb on + strand at 5839.141 kb on + strand at 5839.141 kb on + strand at 5839.142 kb on - strand at 5839.142 kb on - strand at 5839.142 kb on - strand at 5839.162 kb on - strand at 5839.162 kb on - strand at 5839.171 kb on + strand at 5839.398 kb on + strand at 5839.398 kb on + strand at 5839.399 kb on - strand at 5839.399 kb on - strand at 5839.399 kb on - strand at 5839.399 kb on - strand at 5839.828 kb on - strand, within PS417_27040
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 5,836,787 + -0.1 5,836,788 - -0.4 5,836,890 - -0.3 5,837,594 - PS417_27030 0.89 +0.4 5,837,649 + +0.6 5,837,649 + +0.2 5,837,649 + -1.3 5,837,649 + -0.4 5,837,649 + -0.4 5,837,649 + +0.7 5,837,649 + +0.1 5,837,650 - -0.1 5,837,650 - -1.1 5,837,662 - -0.2 5,837,760 + +0.8 5,837,787 + +2.2 5,838,511 + PS417_27035 0.59 -0.0 5,838,703 - PS417_27035 0.73 -1.2 5,838,805 + PS417_27035 0.80 +0.8 5,838,805 + PS417_27035 0.80 +1.2 5,838,806 - PS417_27035 0.80 -0.1 5,838,806 - PS417_27035 0.80 +3.8 5,838,806 - PS417_27035 0.80 -1.3 5,838,806 - PS417_27035 0.80 +1.2 5,839,055 + +0.4 5,839,055 + +0.2 5,839,141 + -0.4 5,839,141 + +0.2 5,839,142 - -0.6 5,839,142 - -0.4 5,839,142 - -0.1 5,839,162 - +1.1 5,839,162 - -2.2 5,839,171 + +0.4 5,839,398 + -0.4 5,839,398 + -0.1 5,839,399 - -0.4 5,839,399 - -0.6 5,839,399 - -0.0 5,839,399 - -0.6 5,839,828 - PS417_27040 0.44 -0.4
Or see this region's nucleotide sequence