Strain Fitness in Pseudomonas simiae WCS417 around PS417_26675

Experiment: Phosphomycin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26665 and PS417_26670 are separated by 46 nucleotidesPS417_26670 and PS417_26675 are separated by 239 nucleotidesPS417_26675 and PS417_26680 are separated by 77 nucleotides PS417_26665: PS417_26665 - chemotaxis protein CheY, at 5,766,156 to 5,766,521 _26665 PS417_26670: PS417_26670 - pilus assembly protein PilG, at 5,766,568 to 5,766,975 _26670 PS417_26675: PS417_26675 - glutathione synthetase, at 5,767,215 to 5,768,168 _26675 PS417_26680: PS417_26680 - energy transducer TonB, at 5,768,246 to 5,769,151 _26680 Position (kb) 5767 5768 5769Strain fitness (log2 ratio) -2 -1 0 1at 5766.535 kb on - strandat 5766.535 kb on - strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.538 kb on + strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.539 kb on - strandat 5766.606 kb on - strandat 5766.606 kb on - strandat 5767.017 kb on + strandat 5767.018 kb on - strandat 5767.018 kb on - strandat 5767.092 kb on - strandat 5767.184 kb on - strandat 5767.193 kb on - strandat 5768.169 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.172 kb on - strandat 5768.172 kb on - strandat 5768.172 kb on - strandat 5768.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml
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5,766,535 - +0.6
5,766,535 - +0.3
5,766,538 + +1.0
5,766,538 + -0.4
5,766,538 + -0.0
5,766,538 + +0.8
5,766,538 + -1.2
5,766,539 - -1.3
5,766,539 - +1.2
5,766,539 - -0.3
5,766,539 - -1.7
5,766,539 - +0.1
5,766,539 - -0.2
5,766,539 - -0.3
5,766,606 - +0.2
5,766,606 - -0.6
5,767,017 + +0.5
5,767,018 - -0.0
5,767,018 - -0.6
5,767,092 - -1.3
5,767,184 - -0.3
5,767,193 - -2.5
5,768,169 + -0.3
5,768,171 + +0.2
5,768,171 + +0.7
5,768,171 + +0.6
5,768,171 + +0.1
5,768,171 + +1.2
5,768,172 - -2.5
5,768,172 - -0.2
5,768,172 - +1.4
5,768,172 - +0.1

Or see this region's nucleotide sequence