Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22945 and PS417_22950 are separated by 69 nucleotides PS417_22950 and PS417_22955 are separated by 140 nucleotides PS417_22955 and PS417_22960 overlap by 4 nucleotides PS417_22960 and PS417_22965 are separated by 36 nucleotides PS417_22965 and PS417_22970 are separated by 149 nucleotides
PS417_22945: PS417_22945 - phosphoribosylglycinamide formyltransferase, at 4,971,320 to 4,972,501
_22945
PS417_22950: PS417_22950 - preQ0 transporter, at 4,972,571 to 4,973,038
_22950
PS417_22955: PS417_22955 - Fe-S protein, at 4,973,179 to 4,973,397
_22955
PS417_22960: PS417_22960 - hypothetical protein, at 4,973,394 to 4,973,918
_22960
PS417_22965: PS417_22965 - DNA mismatch repair protein MutT, at 4,973,955 to 4,974,557
_22965
PS417_22970: PS417_22970 - ADP-ribose pyrophosphatase, at 4,974,707 to 4,975,255
_22970
Position (kb)
4973
4974 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4972.703 kb on - strand, within PS417_22950 at 4972.854 kb on + strand, within PS417_22950 at 4972.855 kb on - strand, within PS417_22950 at 4973.072 kb on + strand at 4973.073 kb on - strand at 4973.090 kb on - strand at 4973.208 kb on + strand, within PS417_22955 at 4973.305 kb on + strand, within PS417_22955 at 4973.331 kb on + strand, within PS417_22955 at 4973.331 kb on + strand, within PS417_22955 at 4973.331 kb on + strand at 4973.331 kb on + strand, within PS417_22955 at 4973.332 kb on - strand, within PS417_22955 at 4973.355 kb on + strand, within PS417_22955 at 4973.356 kb on - strand, within PS417_22955 at 4973.438 kb on + strand at 4973.438 kb on + strand at 4973.438 kb on + strand at 4973.446 kb on + strand at 4973.446 kb on + strand at 4973.447 kb on - strand, within PS417_22960 at 4973.447 kb on - strand, within PS417_22960 at 4973.641 kb on + strand, within PS417_22960 at 4973.642 kb on - strand, within PS417_22960 at 4973.912 kb on - strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.956 kb on + strand at 4973.957 kb on - strand at 4973.957 kb on - strand at 4974.030 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.091 kb on + strand, within PS417_22965 at 4974.092 kb on - strand, within PS417_22965 at 4974.098 kb on + strand at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.099 kb on - strand, within PS417_22965 at 4974.203 kb on - strand, within PS417_22965 at 4974.212 kb on - strand, within PS417_22965 at 4974.312 kb on + strand, within PS417_22965 at 4974.313 kb on - strand, within PS417_22965 at 4974.543 kb on + strand at 4974.543 kb on + strand at 4974.543 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 4,972,703 - PS417_22950 0.28 +0.3 4,972,854 + PS417_22950 0.60 -0.9 4,972,855 - PS417_22950 0.61 -0.0 4,973,072 + -0.5 4,973,073 - +0.0 4,973,090 - -0.4 4,973,208 + PS417_22955 0.13 +0.1 4,973,305 + PS417_22955 0.58 -1.2 4,973,331 + PS417_22955 0.69 -0.2 4,973,331 + PS417_22955 0.69 -0.4 4,973,331 + +0.9 4,973,331 + PS417_22955 0.69 +0.1 4,973,332 - PS417_22955 0.70 +1.3 4,973,355 + PS417_22955 0.80 +0.9 4,973,356 - PS417_22955 0.81 +3.0 4,973,438 + -0.3 4,973,438 + -0.4 4,973,438 + -0.0 4,973,446 + -0.4 4,973,446 + +1.0 4,973,447 - PS417_22960 0.10 -1.7 4,973,447 - PS417_22960 0.10 -1.2 4,973,641 + PS417_22960 0.47 +0.5 4,973,642 - PS417_22960 0.47 -0.3 4,973,912 - -0.4 4,973,956 + -1.2 4,973,956 + +0.3 4,973,956 + -0.8 4,973,956 + +0.9 4,973,957 - +0.8 4,973,957 - -0.3 4,974,030 + PS417_22965 0.12 -0.8 4,974,091 + PS417_22965 0.23 -0.3 4,974,091 + PS417_22965 0.23 -0.9 4,974,091 + PS417_22965 0.23 -0.0 4,974,092 - PS417_22965 0.23 -0.3 4,974,098 + +0.9 4,974,099 - PS417_22965 0.24 -1.0 4,974,099 - PS417_22965 0.24 -0.2 4,974,099 - PS417_22965 0.24 -0.5 4,974,099 - PS417_22965 0.24 -0.3 4,974,203 - PS417_22965 0.41 -1.8 4,974,212 - PS417_22965 0.43 -0.9 4,974,312 + PS417_22965 0.59 -0.4 4,974,313 - PS417_22965 0.59 -0.5 4,974,543 + +0.0 4,974,543 + -0.3 4,974,543 + -0.1
Or see this region's nucleotide sequence