Strain Fitness in Pseudomonas simiae WCS417 around PS417_22960

Experiment: Phosphomycin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22945 and PS417_22950 are separated by 69 nucleotidesPS417_22950 and PS417_22955 are separated by 140 nucleotidesPS417_22955 and PS417_22960 overlap by 4 nucleotidesPS417_22960 and PS417_22965 are separated by 36 nucleotidesPS417_22965 and PS417_22970 are separated by 149 nucleotides PS417_22945: PS417_22945 - phosphoribosylglycinamide formyltransferase, at 4,971,320 to 4,972,501 _22945 PS417_22950: PS417_22950 - preQ0 transporter, at 4,972,571 to 4,973,038 _22950 PS417_22955: PS417_22955 - Fe-S protein, at 4,973,179 to 4,973,397 _22955 PS417_22960: PS417_22960 - hypothetical protein, at 4,973,394 to 4,973,918 _22960 PS417_22965: PS417_22965 - DNA mismatch repair protein MutT, at 4,973,955 to 4,974,557 _22965 PS417_22970: PS417_22970 - ADP-ribose pyrophosphatase, at 4,974,707 to 4,975,255 _22970 Position (kb) 4973 4974Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4972.703 kb on - strand, within PS417_22950at 4972.854 kb on + strand, within PS417_22950at 4972.855 kb on - strand, within PS417_22950at 4973.072 kb on + strandat 4973.073 kb on - strandat 4973.090 kb on - strandat 4973.208 kb on + strand, within PS417_22955at 4973.305 kb on + strand, within PS417_22955at 4973.331 kb on + strand, within PS417_22955at 4973.331 kb on + strand, within PS417_22955at 4973.331 kb on + strandat 4973.331 kb on + strand, within PS417_22955at 4973.332 kb on - strand, within PS417_22955at 4973.355 kb on + strand, within PS417_22955at 4973.356 kb on - strand, within PS417_22955at 4973.438 kb on + strandat 4973.438 kb on + strandat 4973.438 kb on + strandat 4973.446 kb on + strandat 4973.446 kb on + strandat 4973.447 kb on - strand, within PS417_22960at 4973.447 kb on - strand, within PS417_22960at 4973.641 kb on + strand, within PS417_22960at 4973.642 kb on - strand, within PS417_22960at 4973.912 kb on - strandat 4973.956 kb on + strandat 4973.956 kb on + strandat 4973.956 kb on + strandat 4973.956 kb on + strandat 4973.957 kb on - strandat 4973.957 kb on - strandat 4974.030 kb on + strand, within PS417_22965at 4974.091 kb on + strand, within PS417_22965at 4974.091 kb on + strand, within PS417_22965at 4974.091 kb on + strand, within PS417_22965at 4974.092 kb on - strand, within PS417_22965at 4974.098 kb on + strandat 4974.099 kb on - strand, within PS417_22965at 4974.099 kb on - strand, within PS417_22965at 4974.099 kb on - strand, within PS417_22965at 4974.099 kb on - strand, within PS417_22965at 4974.203 kb on - strand, within PS417_22965at 4974.212 kb on - strand, within PS417_22965at 4974.312 kb on + strand, within PS417_22965at 4974.313 kb on - strand, within PS417_22965at 4974.543 kb on + strandat 4974.543 kb on + strandat 4974.543 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml
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4,972,703 - PS417_22950 0.28 +0.3
4,972,854 + PS417_22950 0.60 -0.9
4,972,855 - PS417_22950 0.61 -0.0
4,973,072 + -0.5
4,973,073 - +0.0
4,973,090 - -0.4
4,973,208 + PS417_22955 0.13 +0.1
4,973,305 + PS417_22955 0.58 -1.2
4,973,331 + PS417_22955 0.69 -0.2
4,973,331 + PS417_22955 0.69 -0.4
4,973,331 + +0.9
4,973,331 + PS417_22955 0.69 +0.1
4,973,332 - PS417_22955 0.70 +1.3
4,973,355 + PS417_22955 0.80 +0.9
4,973,356 - PS417_22955 0.81 +3.0
4,973,438 + -0.3
4,973,438 + -0.4
4,973,438 + -0.0
4,973,446 + -0.4
4,973,446 + +1.0
4,973,447 - PS417_22960 0.10 -1.7
4,973,447 - PS417_22960 0.10 -1.2
4,973,641 + PS417_22960 0.47 +0.5
4,973,642 - PS417_22960 0.47 -0.3
4,973,912 - -0.4
4,973,956 + -1.2
4,973,956 + +0.3
4,973,956 + -0.8
4,973,956 + +0.9
4,973,957 - +0.8
4,973,957 - -0.3
4,974,030 + PS417_22965 0.12 -0.8
4,974,091 + PS417_22965 0.23 -0.3
4,974,091 + PS417_22965 0.23 -0.9
4,974,091 + PS417_22965 0.23 -0.0
4,974,092 - PS417_22965 0.23 -0.3
4,974,098 + +0.9
4,974,099 - PS417_22965 0.24 -1.0
4,974,099 - PS417_22965 0.24 -0.2
4,974,099 - PS417_22965 0.24 -0.5
4,974,099 - PS417_22965 0.24 -0.3
4,974,203 - PS417_22965 0.41 -1.8
4,974,212 - PS417_22965 0.43 -0.9
4,974,312 + PS417_22965 0.59 -0.4
4,974,313 - PS417_22965 0.59 -0.5
4,974,543 + +0.0
4,974,543 + -0.3
4,974,543 + -0.1

Or see this region's nucleotide sequence