Strain Fitness in Pseudomonas simiae WCS417 around PS417_22615
Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.002 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,895,990 | - | PS417_22605 | 0.81 | +2.2 | |
4,896,262 | + | +0.1 | |||
4,896,262 | + | -0.1 | |||
4,896,266 | + | +0.1 | |||
4,896,267 | - | +0.3 | |||
4,896,299 | + | -0.2 | |||
4,896,299 | + | +1.2 | |||
4,896,300 | - | -0.1 | |||
4,896,329 | + | PS417_22610 | 0.18 | -0.9 | |
4,896,329 | + | PS417_22610 | 0.18 | +0.4 | |
4,896,368 | + | PS417_22610 | 0.29 | -0.1 | |
4,896,368 | + | PS417_22610 | 0.29 | -0.1 | |
4,896,368 | + | PS417_22610 | 0.29 | -2.2 | |
4,896,568 | - | PS417_22610 | 0.84 | -0.6 | |
4,896,832 | - | +0.8 | |||
4,896,832 | - | +0.7 | |||
4,896,834 | + | -1.3 | |||
4,896,835 | - | +0.1 | |||
4,896,835 | - | +0.8 | |||
4,896,944 | + | PS417_22615 | 0.25 | +0.2 | |
4,897,058 | + | PS417_22615 | 0.55 | +1.3 | |
4,897,059 | - | PS417_22615 | 0.56 | +1.4 | |
4,897,059 | - | PS417_22615 | 0.56 | +1.6 | |
4,897,059 | - | PS417_22615 | 0.56 | +1.3 | |
4,897,130 | + | PS417_22615 | 0.75 | -0.9 | |
4,897,131 | - | PS417_22615 | 0.75 | +2.0 | |
4,897,324 | + | +1.4 | |||
4,897,344 | + | +3.9 | |||
4,897,359 | + | +5.4 | |||
4,897,359 | + | +5.6 | |||
4,897,362 | + | +5.4 | |||
4,897,362 | + | +3.2 | |||
4,897,363 | - | +6.5 | |||
4,897,966 | - | PS417_22620 | 0.39 | +6.8 | |
4,898,007 | + | PS417_22620 | 0.42 | +6.9 |
Or see this region's nucleotide sequence