Strain Fitness in Pseudomonas simiae WCS417 around PS417_22595

Experiment: Phosphomycin 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_22590 and PS417_22595 overlap by 4 nucleotidesPS417_22595 and PS417_22600 overlap by 4 nucleotidesPS417_22600 and PS417_22605 are separated by 7 nucleotides PS417_22590: PS417_22590 - membrane protein, at 4,891,215 to 4,892,744 _22590 PS417_22595: PS417_22595 - hypothetical protein, at 4,892,741 to 4,893,910 _22595 PS417_22600: PS417_22600 - ATPase AAA, at 4,893,907 to 4,894,902 _22600 PS417_22605: PS417_22605 - membrane protein, at 4,894,910 to 4,896,241 _22605 Position (kb) 4892 4893 4894Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4891.834 kb on - strand, within PS417_22590at 4891.862 kb on + strand, within PS417_22590at 4891.862 kb on + strandat 4891.862 kb on + strand, within PS417_22590at 4891.863 kb on - strand, within PS417_22590at 4891.863 kb on - strand, within PS417_22590at 4891.863 kb on - strand, within PS417_22590at 4891.863 kb on - strand, within PS417_22590at 4891.866 kb on + strand, within PS417_22590at 4891.866 kb on + strand, within PS417_22590at 4891.866 kb on + strand, within PS417_22590at 4891.866 kb on + strand, within PS417_22590at 4891.867 kb on - strand, within PS417_22590at 4891.867 kb on - strand, within PS417_22590at 4891.867 kb on - strand, within PS417_22590at 4891.867 kb on - strand, within PS417_22590at 4891.867 kb on - strand, within PS417_22590at 4891.867 kb on - strand, within PS417_22590at 4891.867 kb on - strand, within PS417_22590at 4891.909 kb on + strand, within PS417_22590at 4891.910 kb on - strand, within PS417_22590at 4891.910 kb on - strand, within PS417_22590at 4891.982 kb on - strand, within PS417_22590at 4892.240 kb on + strand, within PS417_22590at 4892.240 kb on + strand, within PS417_22590at 4892.240 kb on + strand, within PS417_22590at 4892.288 kb on + strand, within PS417_22590at 4892.288 kb on + strand, within PS417_22590at 4892.288 kb on + strand, within PS417_22590at 4892.289 kb on - strand, within PS417_22590at 4892.289 kb on - strand, within PS417_22590at 4892.289 kb on - strand, within PS417_22590at 4892.754 kb on + strandat 4892.754 kb on + strandat 4892.755 kb on - strandat 4892.769 kb on + strandat 4892.769 kb on + strandat 4892.770 kb on - strandat 4892.804 kb on + strandat 4892.805 kb on - strandat 4892.805 kb on - strandat 4892.805 kb on - strandat 4892.838 kb on + strandat 4892.879 kb on + strand, within PS417_22595at 4892.879 kb on + strand, within PS417_22595at 4892.902 kb on - strand, within PS417_22595at 4892.936 kb on - strand, within PS417_22595at 4893.022 kb on - strand, within PS417_22595at 4893.225 kb on - strand, within PS417_22595at 4893.252 kb on - strand, within PS417_22595at 4893.252 kb on - strand, within PS417_22595at 4893.441 kb on - strand, within PS417_22595at 4893.906 kb on + strandat 4893.907 kb on - strandat 4894.196 kb on + strand, within PS417_22600at 4894.198 kb on + strand, within PS417_22600at 4894.242 kb on - strand, within PS417_22600at 4894.410 kb on + strand, within PS417_22600at 4894.410 kb on + strand, within PS417_22600at 4894.410 kb on + strand, within PS417_22600at 4894.415 kb on - strand, within PS417_22600at 4894.541 kb on + strand, within PS417_22600at 4894.541 kb on + strand, within PS417_22600at 4894.542 kb on - strand, within PS417_22600at 4894.542 kb on - strand, within PS417_22600at 4894.542 kb on - strandat 4894.542 kb on - strand, within PS417_22600at 4894.542 kb on - strand, within PS417_22600at 4894.634 kb on - strand, within PS417_22600at 4894.816 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml
remove
4,891,834 - PS417_22590 0.40 +0.8
4,891,862 + PS417_22590 0.42 +0.4
4,891,862 + +1.9
4,891,862 + PS417_22590 0.42 +0.1
4,891,863 - PS417_22590 0.42 -0.1
4,891,863 - PS417_22590 0.42 -0.2
4,891,863 - PS417_22590 0.42 +0.8
4,891,863 - PS417_22590 0.42 +0.1
4,891,866 + PS417_22590 0.43 -1.6
4,891,866 + PS417_22590 0.43 -0.5
4,891,866 + PS417_22590 0.43 -0.0
4,891,866 + PS417_22590 0.43 +0.7
4,891,867 - PS417_22590 0.43 -0.6
4,891,867 - PS417_22590 0.43 +0.8
4,891,867 - PS417_22590 0.43 +2.5
4,891,867 - PS417_22590 0.43 -0.1
4,891,867 - PS417_22590 0.43 -0.1
4,891,867 - PS417_22590 0.43 -1.6
4,891,867 - PS417_22590 0.43 +0.3
4,891,909 + PS417_22590 0.45 +0.5
4,891,910 - PS417_22590 0.45 -0.2
4,891,910 - PS417_22590 0.45 -0.0
4,891,982 - PS417_22590 0.50 +2.3
4,892,240 + PS417_22590 0.67 -3.1
4,892,240 + PS417_22590 0.67 +0.3
4,892,240 + PS417_22590 0.67 -0.6
4,892,288 + PS417_22590 0.70 +0.9
4,892,288 + PS417_22590 0.70 +0.2
4,892,288 + PS417_22590 0.70 +0.3
4,892,289 - PS417_22590 0.70 -0.7
4,892,289 - PS417_22590 0.70 -0.6
4,892,289 - PS417_22590 0.70 -0.4
4,892,754 + +0.2
4,892,754 + +0.3
4,892,755 - -0.6
4,892,769 + -1.2
4,892,769 + +0.8
4,892,770 - -1.2
4,892,804 + +0.0
4,892,805 - -1.9
4,892,805 - -0.3
4,892,805 - -0.5
4,892,838 + -0.9
4,892,879 + PS417_22595 0.12 +0.2
4,892,879 + PS417_22595 0.12 +0.4
4,892,902 - PS417_22595 0.14 +0.5
4,892,936 - PS417_22595 0.17 -0.7
4,893,022 - PS417_22595 0.24 -0.2
4,893,225 - PS417_22595 0.41 -0.1
4,893,252 - PS417_22595 0.44 +0.4
4,893,252 - PS417_22595 0.44 +0.2
4,893,441 - PS417_22595 0.60 +0.4
4,893,906 + +0.5
4,893,907 - +0.5
4,894,196 + PS417_22600 0.29 -0.2
4,894,198 + PS417_22600 0.29 -1.2
4,894,242 - PS417_22600 0.34 +0.3
4,894,410 + PS417_22600 0.51 -0.7
4,894,410 + PS417_22600 0.51 +0.6
4,894,410 + PS417_22600 0.51 +0.3
4,894,415 - PS417_22600 0.51 +0.7
4,894,541 + PS417_22600 0.64 +0.3
4,894,541 + PS417_22600 0.64 -0.2
4,894,542 - PS417_22600 0.64 -0.6
4,894,542 - PS417_22600 0.64 -0.6
4,894,542 - +0.3
4,894,542 - PS417_22600 0.64 +0.3
4,894,542 - PS417_22600 0.64 -2.8
4,894,634 - PS417_22600 0.73 +0.5
4,894,816 - -0.2

Or see this region's nucleotide sequence