Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21005 and PS417_21010 are separated by 13 nucleotides PS417_21010 and PS417_21015 are separated by 188 nucleotides
PS417_21005: PS417_21005 - CmaX protein, at 4,568,365 to 4,569,360
_21005
PS417_21010: PS417_21010 - ribonuclease activity regulator protein RraA, at 4,569,374 to 4,569,865
_21010
PS417_21015: PS417_21015 - EstX protein, at 4,570,054 to 4,571,043
_21015
Position (kb)
4569
4570 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4568.546 kb on + strand, within PS417_21005 at 4568.673 kb on - strand, within PS417_21005 at 4568.810 kb on + strand, within PS417_21005 at 4568.811 kb on - strand, within PS417_21005 at 4568.886 kb on + strand, within PS417_21005 at 4568.908 kb on - strand, within PS417_21005 at 4568.908 kb on - strand, within PS417_21005 at 4568.909 kb on + strand, within PS417_21005 at 4568.909 kb on + strand at 4568.910 kb on - strand, within PS417_21005 at 4568.910 kb on - strand, within PS417_21005 at 4568.910 kb on - strand, within PS417_21005 at 4569.303 kb on + strand at 4569.375 kb on + strand at 4569.375 kb on + strand at 4569.429 kb on + strand, within PS417_21010 at 4569.429 kb on + strand, within PS417_21010 at 4569.435 kb on + strand, within PS417_21010 at 4569.436 kb on - strand, within PS417_21010 at 4569.436 kb on - strand, within PS417_21010 at 4569.436 kb on - strand, within PS417_21010 at 4569.436 kb on - strand, within PS417_21010 at 4569.536 kb on + strand, within PS417_21010 at 4569.731 kb on - strand, within PS417_21010 at 4569.855 kb on + strand at 4569.856 kb on - strand at 4570.003 kb on + strand at 4570.004 kb on - strand at 4570.220 kb on + strand, within PS417_21015 at 4570.393 kb on - strand, within PS417_21015 at 4570.393 kb on - strand, within PS417_21015 at 4570.700 kb on + strand at 4570.800 kb on - strand, within PS417_21015
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 4,568,546 + PS417_21005 0.18 -0.1 4,568,673 - PS417_21005 0.31 +0.7 4,568,810 + PS417_21005 0.45 +0.6 4,568,811 - PS417_21005 0.45 -0.5 4,568,886 + PS417_21005 0.52 +1.4 4,568,908 - PS417_21005 0.55 +0.4 4,568,908 - PS417_21005 0.55 -0.1 4,568,909 + PS417_21005 0.55 -0.5 4,568,909 + -1.0 4,568,910 - PS417_21005 0.55 -0.4 4,568,910 - PS417_21005 0.55 +0.4 4,568,910 - PS417_21005 0.55 -0.3 4,569,303 + -0.6 4,569,375 + -2.7 4,569,375 + +1.0 4,569,429 + PS417_21010 0.11 +0.0 4,569,429 + PS417_21010 0.11 -0.0 4,569,435 + PS417_21010 0.12 +4.6 4,569,436 - PS417_21010 0.13 -0.1 4,569,436 - PS417_21010 0.13 +1.2 4,569,436 - PS417_21010 0.13 -1.1 4,569,436 - PS417_21010 0.13 +0.4 4,569,536 + PS417_21010 0.33 -0.7 4,569,731 - PS417_21010 0.73 +0.8 4,569,855 + +1.3 4,569,856 - -0.1 4,570,003 + -0.2 4,570,004 - -0.7 4,570,220 + PS417_21015 0.17 -1.0 4,570,393 - PS417_21015 0.34 +0.2 4,570,393 - PS417_21015 0.34 +0.3 4,570,700 + +0.5 4,570,800 - PS417_21015 0.75 -0.4
Or see this region's nucleotide sequence