Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19415 and PS417_19420 overlap by 4 nucleotides PS417_19420 and PS417_19425 are separated by 41 nucleotides PS417_19425 and PS417_19430 are separated by 124 nucleotides PS417_19430 and PS417_19435 are separated by 51 nucleotides
PS417_19415: PS417_19415 - allantoinase, at 4,210,656 to 4,211,582
_19415
PS417_19420: PS417_19420 - OHCU decarboxylase, at 4,211,579 to 4,212,094
_19420
PS417_19425: PS417_19425 - allantoicase, at 4,212,136 to 4,213,131
_19425
PS417_19430: PS417_19430 - ureidoglycolate hydrolase, at 4,213,256 to 4,213,759
_19430
PS417_19435: PS417_19435 - urate hydroxylase (1.7.3.3) <small>(from data)</small>, at 4,213,811 to 4,215,112
_19435
Position (kb) 4212
4213
4214 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4211.146 kb on - strand, within PS417_19415 at 4211.599 kb on + strand at 4211.928 kb on - strand, within PS417_19420 at 4211.928 kb on - strand, within PS417_19420 at 4211.965 kb on - strand, within PS417_19420 at 4211.965 kb on - strand, within PS417_19420 at 4212.061 kb on + strand at 4212.061 kb on + strand at 4212.061 kb on + strand at 4212.062 kb on - strand at 4212.146 kb on - strand at 4212.146 kb on - strand at 4212.589 kb on + strand, within PS417_19425 at 4213.215 kb on - strand at 4213.243 kb on + strand at 4213.609 kb on + strand, within PS417_19430 at 4213.614 kb on - strand, within PS417_19430 at 4213.699 kb on + strand, within PS417_19430 at 4213.757 kb on + strand at 4213.757 kb on + strand at 4213.757 kb on + strand at 4213.804 kb on - strand at 4213.988 kb on + strand, within PS417_19435 at 4213.988 kb on + strand, within PS417_19435 at 4213.989 kb on - strand, within PS417_19435 at 4214.061 kb on - strand, within PS417_19435 at 4214.124 kb on - strand, within PS417_19435 at 4214.124 kb on - strand, within PS417_19435
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 4,211,146 - PS417_19415 0.53 +0.9 4,211,599 + -1.5 4,211,928 - PS417_19420 0.68 -1.1 4,211,928 - PS417_19420 0.68 +0.6 4,211,965 - PS417_19420 0.75 -0.4 4,211,965 - PS417_19420 0.75 -0.6 4,212,061 + +0.1 4,212,061 + -0.2 4,212,061 + -1.4 4,212,062 - +0.1 4,212,146 - -0.1 4,212,146 - -0.3 4,212,589 + PS417_19425 0.45 -0.7 4,213,215 - -0.4 4,213,243 + +0.3 4,213,609 + PS417_19430 0.70 -0.4 4,213,614 - PS417_19430 0.71 +0.0 4,213,699 + PS417_19430 0.88 +0.1 4,213,757 + +0.6 4,213,757 + +2.4 4,213,757 + -2.1 4,213,804 - -0.2 4,213,988 + PS417_19435 0.14 +0.9 4,213,988 + PS417_19435 0.14 -0.2 4,213,989 - PS417_19435 0.14 -0.4 4,214,061 - PS417_19435 0.19 -0.8 4,214,124 - PS417_19435 0.24 +0.7 4,214,124 - PS417_19435 0.24 -0.3
Or see this region's nucleotide sequence