Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01870 and PS417_01875 are separated by 144 nucleotides PS417_01875 and PS417_01880 are separated by 105 nucleotides PS417_01880 and PS417_01885 are separated by 12 nucleotides PS417_01885 and PS417_01890 are separated by 78 nucleotides PS417_01890 and PS417_01895 are separated by 27 nucleotides
PS417_01870: PS417_01870 - ubiquinone biosynthesis methyltransferase UbiE, at 415,012 to 415,782
_01870
PS417_01875: PS417_01875 - polyhydroxyalkanoic acid system protein, at 415,927 to 416,202
_01875
PS417_01880: PS417_01880 - poly(3-hydroxyalkanoate) granule-associated protein PhaI, at 416,308 to 416,730
_01880
PS417_01885: PS417_01885 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 416,743 to 417,726
_01885
PS417_01890: PS417_01890 - TetR family transcriptional regulator, at 417,805 to 418,425
_01890
PS417_01895: PS417_01895 - poly(R)-hydroxyalkanoic acid synthase, at 418,453 to 420,135
_01895
Position (kb)
416
417
418 Strain fitness (log2 ratio)
-1
0
1
2 at 415.783 kb on - strand at 415.783 kb on - strand at 415.817 kb on - strand at 415.831 kb on - strand at 415.855 kb on + strand at 415.855 kb on + strand at 415.855 kb on + strand at 415.856 kb on - strand at 415.856 kb on - strand at 415.936 kb on - strand at 415.936 kb on - strand at 416.049 kb on + strand, within PS417_01875 at 416.087 kb on + strand, within PS417_01875 at 416.289 kb on - strand at 416.367 kb on + strand, within PS417_01880 at 416.368 kb on - strand, within PS417_01880 at 416.411 kb on - strand, within PS417_01880 at 416.547 kb on + strand, within PS417_01880 at 416.590 kb on - strand, within PS417_01880 at 416.705 kb on + strand at 416.705 kb on + strand at 416.706 kb on - strand at 416.706 kb on - strand at 416.706 kb on - strand at 416.721 kb on + strand at 416.728 kb on + strand at 416.728 kb on + strand at 416.760 kb on + strand at 416.869 kb on + strand, within PS417_01885 at 416.870 kb on - strand, within PS417_01885 at 416.870 kb on - strand, within PS417_01885 at 417.132 kb on + strand, within PS417_01885 at 417.621 kb on + strand, within PS417_01885 at 417.622 kb on - strand, within PS417_01885 at 417.806 kb on + strand at 417.807 kb on - strand at 417.824 kb on + strand at 417.825 kb on - strand at 417.868 kb on + strand, within PS417_01890 at 417.868 kb on + strand, within PS417_01890 at 417.868 kb on + strand, within PS417_01890 at 417.899 kb on + strand, within PS417_01890 at 417.900 kb on - strand, within PS417_01890 at 417.914 kb on - strand, within PS417_01890 at 418.152 kb on - strand, within PS417_01890 at 418.193 kb on + strand, within PS417_01890 at 418.194 kb on - strand, within PS417_01890 at 418.194 kb on - strand, within PS417_01890 at 418.277 kb on - strand, within PS417_01890 at 418.304 kb on + strand, within PS417_01890 at 418.304 kb on + strand, within PS417_01890 at 418.307 kb on + strand, within PS417_01890 at 418.436 kb on + strand at 418.436 kb on + strand at 418.437 kb on - strand at 418.437 kb on - strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.470 kb on - strand at 418.470 kb on - strand at 418.470 kb on - strand at 418.610 kb on + strand at 418.611 kb on - strand at 418.652 kb on + strand, within PS417_01895 at 418.652 kb on + strand, within PS417_01895 at 418.652 kb on + strand, within PS417_01895
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 415,783 - +0.3 415,783 - +0.3 415,817 - -1.6 415,831 - +1.9 415,855 + +1.1 415,855 + +0.1 415,855 + +1.1 415,856 - -0.3 415,856 - -0.0 415,936 - +0.1 415,936 - +0.2 416,049 + PS417_01875 0.44 +0.5 416,087 + PS417_01875 0.58 -0.1 416,289 - +1.7 416,367 + PS417_01880 0.14 -0.5 416,368 - PS417_01880 0.14 +0.2 416,411 - PS417_01880 0.24 -1.0 416,547 + PS417_01880 0.57 -0.2 416,590 - PS417_01880 0.67 -0.0 416,705 + -0.1 416,705 + +1.0 416,706 - -0.6 416,706 - +0.4 416,706 - -0.3 416,721 + -0.1 416,728 + +0.5 416,728 + -0.9 416,760 + +0.2 416,869 + PS417_01885 0.13 -0.1 416,870 - PS417_01885 0.13 -0.7 416,870 - PS417_01885 0.13 -0.5 417,132 + PS417_01885 0.40 -1.1 417,621 + PS417_01885 0.89 -1.4 417,622 - PS417_01885 0.89 -1.2 417,806 + +0.4 417,807 - -0.3 417,824 + -0.5 417,825 - -1.0 417,868 + PS417_01890 0.10 -1.7 417,868 + PS417_01890 0.10 -0.1 417,868 + PS417_01890 0.10 -0.1 417,899 + PS417_01890 0.15 +0.1 417,900 - PS417_01890 0.15 -0.5 417,914 - PS417_01890 0.18 +0.5 418,152 - PS417_01890 0.56 -0.8 418,193 + PS417_01890 0.62 +0.5 418,194 - PS417_01890 0.63 -0.7 418,194 - PS417_01890 0.63 -0.1 418,277 - PS417_01890 0.76 -0.2 418,304 + PS417_01890 0.80 +0.2 418,304 + PS417_01890 0.80 +2.1 418,307 + PS417_01890 0.81 +0.7 418,436 + +0.3 418,436 + +0.4 418,437 - +1.0 418,437 - -0.6 418,469 + -0.1 418,469 + -1.0 418,469 + +0.5 418,469 + -1.2 418,469 + -0.4 418,469 + -0.5 418,469 + -0.5 418,469 + +0.4 418,469 + +0.6 418,470 - +0.7 418,470 - -0.2 418,470 - +0.1 418,610 + -0.5 418,611 - -0.3 418,652 + PS417_01895 0.12 +0.2 418,652 + PS417_01895 0.12 -0.3 418,652 + PS417_01895 0.12 -1.1
Or see this region's nucleotide sequence