Strain Fitness in Pseudomonas simiae WCS417 around PS417_01830

Experiment: Phosphomycin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01825 and PS417_01830 are separated by 87 nucleotidesPS417_01830 and PS417_01835 overlap by 4 nucleotidesPS417_01835 and PS417_01840 overlap by 4 nucleotides PS417_01825: PS417_01825 - chemotaxis protein, at 407,805 to 409,721 _01825 PS417_01830: PS417_01830 - 16S rRNA methyltransferase, at 409,809 to 410,516 _01830 PS417_01835: PS417_01835 - twin-arginine protein translocation system subunit TatC, at 410,513 to 411,301 _01835 PS417_01840: PS417_01840 - preprotein translocase, at 411,298 to 411,702 _01840 Position (kb) 409 410 411Strain fitness (log2 ratio) -1 0 1at 409.156 kb on + strand, within PS417_01825at 409.156 kb on + strand, within PS417_01825at 409.364 kb on + strand, within PS417_01825at 409.365 kb on - strand, within PS417_01825at 409.365 kb on - strand, within PS417_01825at 409.633 kb on - strandat 409.644 kb on + strandat 409.645 kb on - strandat 409.645 kb on - strandat 409.789 kb on + strandat 410.189 kb on - strand, within PS417_01830at 411.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml
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409,156 + PS417_01825 0.70 -0.1
409,156 + PS417_01825 0.70 +1.6
409,364 + PS417_01825 0.81 -1.2
409,365 - PS417_01825 0.81 +0.4
409,365 - PS417_01825 0.81 -1.0
409,633 - -0.1
409,644 + -0.2
409,645 - -0.4
409,645 - -0.3
409,789 + +0.1
410,189 - PS417_01830 0.54 +0.5
411,322 - -0.8

Or see this region's nucleotide sequence