Strain Fitness in Pseudomonas simiae WCS417 around PS417_17410
Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.002 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,801,811 | + | +2.2 | |||
| 3,801,811 | + | -0.8 | |||
| 3,801,811 | + | -0.8 | |||
| 3,801,816 | - | +0.1 | |||
| 3,801,816 | - | +0.6 | |||
| 3,801,835 | + | +1.6 | |||
| 3,801,836 | - | -0.3 | |||
| 3,801,873 | + | +0.0 | |||
| 3,802,220 | + | PS417_17405 | 0.51 | +1.2 | |
| 3,802,272 | + | PS417_17405 | 0.58 | -0.2 | |
| 3,802,303 | + | PS417_17405 | 0.62 | +0.2 | |
| 3,802,605 | + | -0.0 | |||
| 3,802,726 | + | +0.1 | |||
| 3,802,948 | - | PS417_17410 | 0.11 | -0.9 | |
| 3,803,325 | - | PS417_17410 | 0.36 | -1.4 | |
| 3,803,440 | + | PS417_17410 | 0.44 | -0.4 | |
| 3,803,608 | - | PS417_17410 | 0.55 | +2.2 | |
| 3,804,087 | - | PS417_17410 | 0.88 | -1.6 | |
| 3,804,087 | - | PS417_17410 | 0.88 | -0.2 | |
| 3,804,087 | - | PS417_17410 | 0.88 | -1.4 | |
| 3,804,205 | + | +2.2 | |||
| 3,804,549 | + | PS417_17415 | 0.15 | +0.5 | |
| 3,804,550 | - | PS417_17415 | 0.15 | -0.1 | |
| 3,804,732 | - | +0.9 |
Or see this region's nucleotide sequence