Strain Fitness in Pseudomonas simiae WCS417 around PS417_17125
Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.002 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,738,809 | - | PS417_17120 | 0.42 | +0.6 | |
3,738,976 | + | PS417_17120 | 0.55 | -0.3 | |
3,738,976 | + | PS417_17120 | 0.55 | +2.0 | |
3,739,183 | + | PS417_17120 | 0.71 | -0.4 | |
3,739,184 | - | PS417_17120 | 0.71 | +0.6 | |
3,739,184 | - | PS417_17120 | 0.71 | -0.5 | |
3,739,291 | + | PS417_17120 | 0.79 | +0.2 | |
3,739,302 | + | PS417_17120 | 0.80 | +0.0 | |
3,739,681 | + | +0.7 | |||
3,739,801 | + | PS417_17125 | 0.17 | -1.2 | |
3,739,801 | + | PS417_17125 | 0.17 | -0.5 | |
3,739,802 | - | PS417_17125 | 0.17 | -0.9 | |
3,740,075 | + | PS417_17125 | 0.56 | -0.1 | |
3,740,140 | + | PS417_17125 | 0.65 | -1.1 | |
3,740,360 | + | +1.1 | |||
3,740,452 | - | -0.3 | |||
3,740,470 | - | -0.3 | |||
3,740,654 | + | PS417_17130 | 0.12 | +0.8 | |
3,741,035 | + | PS417_17130 | 0.41 | -0.7 | |
3,741,036 | - | PS417_17130 | 0.41 | -0.0 | |
3,741,252 | + | PS417_17130 | 0.57 | -0.2 | |
3,741,297 | + | PS417_17130 | 0.60 | +1.2 | |
3,741,329 | + | PS417_17130 | 0.63 | +1.3 | |
3,741,329 | + | +0.0 | |||
3,741,330 | - | PS417_17130 | 0.63 | +0.0 | |
3,741,378 | - | PS417_17130 | 0.66 | +1.3 | |
3,741,378 | - | PS417_17130 | 0.66 | -0.8 |
Or see this region's nucleotide sequence