Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16480 and PS417_16485 are separated by 10 nucleotides PS417_16485 and PS417_16490 are separated by 54 nucleotides PS417_16490 and PS417_16495 are separated by 496 nucleotides
PS417_16480: PS417_16480 - recombination factor protein RarA, at 3,599,374 to 3,600,696
_16480
PS417_16485: PS417_16485 - membrane protein, at 3,600,707 to 3,601,330
_16485
PS417_16490: PS417_16490 - cell division protein FtsK, at 3,601,385 to 3,603,793
_16490
PS417_16495: PS417_16495 - leucyl/phenylalanyl-tRNA--protein transferase, at 3,604,290 to 3,604,970
_16495
Position (kb)
3601
3602
3603
3604 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3600.623 kb on + strand at 3600.624 kb on - strand at 3600.708 kb on + strand at 3601.573 kb on - strand at 3602.171 kb on - strand, within PS417_16490 at 3602.876 kb on - strand, within PS417_16490 at 3603.847 kb on - strand at 3603.954 kb on - strand at 3604.003 kb on - strand at 3604.065 kb on - strand at 3604.172 kb on + strand at 3604.225 kb on - strand at 3604.225 kb on - strand at 3604.304 kb on - strand at 3604.403 kb on - strand, within PS417_16495 at 3604.545 kb on + strand, within PS417_16495 at 3604.609 kb on - strand, within PS417_16495 at 3604.638 kb on - strand, within PS417_16495 at 3604.725 kb on + strand, within PS417_16495 at 3604.725 kb on + strand, within PS417_16495
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 3,600,623 + +2.4 3,600,624 - -0.3 3,600,708 + -1.7 3,601,573 - -0.5 3,602,171 - PS417_16490 0.33 -3.5 3,602,876 - PS417_16490 0.62 -1.9 3,603,847 - -0.0 3,603,954 - -0.2 3,604,003 - +1.5 3,604,065 - +0.2 3,604,172 + +1.5 3,604,225 - +0.9 3,604,225 - +1.5 3,604,304 - -0.0 3,604,403 - PS417_16495 0.17 -0.0 3,604,545 + PS417_16495 0.37 +0.5 3,604,609 - PS417_16495 0.47 +1.8 3,604,638 - PS417_16495 0.51 -0.2 3,604,725 + PS417_16495 0.64 -0.2 3,604,725 + PS417_16495 0.64 -1.0
Or see this region's nucleotide sequence