Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16370 and PS417_16375 are separated by 122 nucleotides PS417_16375 and PS417_16380 are separated by 70 nucleotides PS417_16380 and PS417_16385 overlap by 4 nucleotides
PS417_16370: PS417_16370 - chemotaxis protein CheY, at 3,581,323 to 3,584,076
_16370
PS417_16375: PS417_16375 - 2-hydroxyacid dehydrogenase, at 3,584,199 to 3,585,188
_16375
PS417_16380: PS417_16380 - hypothetical protein, at 3,585,259 to 3,585,699
_16380
PS417_16385: PS417_16385 - hypothetical protein, at 3,585,696 to 3,586,100
_16385
Position (kb)
3584
3585
3586 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3583.367 kb on + strand, within PS417_16370 at 3583.475 kb on + strand, within PS417_16370 at 3583.627 kb on + strand, within PS417_16370 at 3583.742 kb on + strand, within PS417_16370 at 3583.743 kb on - strand, within PS417_16370 at 3584.230 kb on - strand at 3584.230 kb on - strand at 3584.314 kb on + strand, within PS417_16375 at 3584.433 kb on + strand, within PS417_16375 at 3584.433 kb on + strand, within PS417_16375 at 3584.497 kb on - strand, within PS417_16375 at 3584.569 kb on - strand, within PS417_16375 at 3584.715 kb on + strand, within PS417_16375 at 3584.976 kb on + strand, within PS417_16375 at 3584.976 kb on + strand, within PS417_16375 at 3584.976 kb on + strand, within PS417_16375 at 3584.976 kb on + strand, within PS417_16375 at 3585.201 kb on + strand at 3585.231 kb on + strand at 3585.231 kb on + strand at 3585.408 kb on + strand, within PS417_16380 at 3585.784 kb on - strand, within PS417_16385 at 3585.784 kb on - strand, within PS417_16385 at 3585.822 kb on + strand, within PS417_16385 at 3585.823 kb on - strand, within PS417_16385 at 3585.901 kb on - strand, within PS417_16385 at 3586.025 kb on + strand, within PS417_16385 at 3586.174 kb on + strand at 3586.175 kb on - strand at 3586.175 kb on - strand at 3586.176 kb on + strand at 3586.176 kb on + strand at 3586.176 kb on + strand at 3586.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 3,583,367 + PS417_16370 0.74 -1.1 3,583,475 + PS417_16370 0.78 +0.5 3,583,627 + PS417_16370 0.84 -1.2 3,583,742 + PS417_16370 0.88 +1.5 3,583,743 - PS417_16370 0.88 -1.0 3,584,230 - -0.9 3,584,230 - -0.2 3,584,314 + PS417_16375 0.12 -1.8 3,584,433 + PS417_16375 0.24 -0.2 3,584,433 + PS417_16375 0.24 -1.1 3,584,497 - PS417_16375 0.30 -0.5 3,584,569 - PS417_16375 0.37 -1.0 3,584,715 + PS417_16375 0.52 -0.2 3,584,976 + PS417_16375 0.78 -0.2 3,584,976 + PS417_16375 0.78 -1.2 3,584,976 + PS417_16375 0.78 +0.5 3,584,976 + PS417_16375 0.78 -1.8 3,585,201 + -0.4 3,585,231 + +0.3 3,585,231 + -1.3 3,585,408 + PS417_16380 0.34 +2.5 3,585,784 - PS417_16385 0.22 -1.2 3,585,784 - PS417_16385 0.22 +0.5 3,585,822 + PS417_16385 0.31 -0.4 3,585,823 - PS417_16385 0.31 +0.1 3,585,901 - PS417_16385 0.51 +0.3 3,586,025 + PS417_16385 0.81 +1.9 3,586,174 + -0.1 3,586,175 - +0.2 3,586,175 - -0.1 3,586,176 + -0.5 3,586,176 + +1.7 3,586,176 + -2.6 3,586,177 - +0.5
Or see this region's nucleotide sequence