Strain Fitness in Pseudomonas simiae WCS417 around PS417_14350

Experiment: Phosphomycin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14345 and PS417_14350 are separated by 75 nucleotidesPS417_14350 and PS417_14355 are separated by 30 nucleotidesPS417_14355 and PS417_14360 are separated by 100 nucleotides PS417_14345: PS417_14345 - LysR family transcriptional regulator, at 3,138,625 to 3,139,530 _14345 PS417_14350: PS417_14350 - multidrug DMT transporter permease, at 3,139,606 to 3,140,433 _14350 PS417_14355: PS417_14355 - sugar dehydrogenase, at 3,140,464 to 3,141,225 _14355 PS417_14360: PS417_14360 - hypothetical protein, at 3,141,326 to 3,141,868 _14360 Position (kb) 3139 3140 3141Strain fitness (log2 ratio) -3 -2 -1 0 1at 3138.770 kb on + strandat 3138.879 kb on + strand, within PS417_14345at 3138.879 kb on + strand, within PS417_14345at 3138.880 kb on - strand, within PS417_14345at 3138.922 kb on + strand, within PS417_14345at 3138.923 kb on - strand, within PS417_14345at 3138.923 kb on - strand, within PS417_14345at 3139.307 kb on + strand, within PS417_14345at 3139.308 kb on - strand, within PS417_14345at 3139.617 kb on + strandat 3139.622 kb on + strandat 3139.623 kb on - strandat 3139.626 kb on - strandat 3139.754 kb on - strand, within PS417_14350at 3139.820 kb on - strand, within PS417_14350at 3139.822 kb on - strand, within PS417_14350at 3139.822 kb on - strand, within PS417_14350at 3139.986 kb on + strand, within PS417_14350at 3140.119 kb on + strand, within PS417_14350at 3140.119 kb on + strand, within PS417_14350at 3140.167 kb on + strand, within PS417_14350at 3140.168 kb on - strand, within PS417_14350at 3140.272 kb on + strand, within PS417_14350at 3140.272 kb on + strand, within PS417_14350at 3140.273 kb on - strand, within PS417_14350at 3140.273 kb on - strand, within PS417_14350at 3140.351 kb on - strandat 3140.575 kb on + strand, within PS417_14355at 3140.648 kb on + strand, within PS417_14355at 3140.938 kb on + strand, within PS417_14355at 3140.939 kb on - strand, within PS417_14355at 3140.939 kb on - strand, within PS417_14355at 3140.948 kb on - strand, within PS417_14355at 3141.046 kb on - strand, within PS417_14355at 3141.046 kb on - strand, within PS417_14355at 3141.046 kb on - strand, within PS417_14355at 3141.186 kb on + strandat 3141.187 kb on - strandat 3141.209 kb on + strandat 3141.209 kb on + strandat 3141.224 kb on - strandat 3141.232 kb on + strandat 3141.232 kb on + strandat 3141.233 kb on - strandat 3141.308 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml
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3,138,770 + -0.1
3,138,879 + PS417_14345 0.28 -0.6
3,138,879 + PS417_14345 0.28 -1.1
3,138,880 - PS417_14345 0.28 -1.6
3,138,922 + PS417_14345 0.33 -0.5
3,138,923 - PS417_14345 0.33 -1.7
3,138,923 - PS417_14345 0.33 -0.9
3,139,307 + PS417_14345 0.75 +1.5
3,139,308 - PS417_14345 0.75 -0.8
3,139,617 + -0.5
3,139,622 + -1.5
3,139,623 - +0.3
3,139,626 - -2.5
3,139,754 - PS417_14350 0.18 -1.8
3,139,820 - PS417_14350 0.26 -0.5
3,139,822 - PS417_14350 0.26 -0.6
3,139,822 - PS417_14350 0.26 -1.5
3,139,986 + PS417_14350 0.46 +1.1
3,140,119 + PS417_14350 0.62 -1.6
3,140,119 + PS417_14350 0.62 -0.5
3,140,167 + PS417_14350 0.68 -1.2
3,140,168 - PS417_14350 0.68 -2.3
3,140,272 + PS417_14350 0.80 -3.1
3,140,272 + PS417_14350 0.80 -2.4
3,140,273 - PS417_14350 0.81 -2.2
3,140,273 - PS417_14350 0.81 +1.5
3,140,351 - -0.1
3,140,575 + PS417_14355 0.15 +0.0
3,140,648 + PS417_14355 0.24 +0.5
3,140,938 + PS417_14355 0.62 -0.4
3,140,939 - PS417_14355 0.62 +1.1
3,140,939 - PS417_14355 0.62 -0.3
3,140,948 - PS417_14355 0.64 -0.4
3,141,046 - PS417_14355 0.76 -0.5
3,141,046 - PS417_14355 0.76 -0.2
3,141,046 - PS417_14355 0.76 -1.1
3,141,186 + +0.4
3,141,187 - +1.5
3,141,209 + -0.3
3,141,209 + +0.3
3,141,224 - +0.5
3,141,232 + -0.1
3,141,232 + +0.2
3,141,233 - +0.1
3,141,308 - +1.5

Or see this region's nucleotide sequence