Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14345 and PS417_14350 are separated by 75 nucleotides PS417_14350 and PS417_14355 are separated by 30 nucleotides PS417_14355 and PS417_14360 are separated by 100 nucleotides
PS417_14345: PS417_14345 - LysR family transcriptional regulator, at 3,138,625 to 3,139,530
_14345
PS417_14350: PS417_14350 - multidrug DMT transporter permease, at 3,139,606 to 3,140,433
_14350
PS417_14355: PS417_14355 - sugar dehydrogenase, at 3,140,464 to 3,141,225
_14355
PS417_14360: PS417_14360 - hypothetical protein, at 3,141,326 to 3,141,868
_14360
Position (kb)
3139
3140
3141 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3138.770 kb on + strand at 3138.879 kb on + strand, within PS417_14345 at 3138.879 kb on + strand, within PS417_14345 at 3138.880 kb on - strand, within PS417_14345 at 3138.922 kb on + strand, within PS417_14345 at 3138.923 kb on - strand, within PS417_14345 at 3138.923 kb on - strand, within PS417_14345 at 3139.307 kb on + strand, within PS417_14345 at 3139.308 kb on - strand, within PS417_14345 at 3139.617 kb on + strand at 3139.622 kb on + strand at 3139.623 kb on - strand at 3139.626 kb on - strand at 3139.754 kb on - strand, within PS417_14350 at 3139.820 kb on - strand, within PS417_14350 at 3139.822 kb on - strand, within PS417_14350 at 3139.822 kb on - strand, within PS417_14350 at 3139.986 kb on + strand, within PS417_14350 at 3140.119 kb on + strand, within PS417_14350 at 3140.119 kb on + strand, within PS417_14350 at 3140.167 kb on + strand, within PS417_14350 at 3140.168 kb on - strand, within PS417_14350 at 3140.272 kb on + strand, within PS417_14350 at 3140.272 kb on + strand, within PS417_14350 at 3140.273 kb on - strand, within PS417_14350 at 3140.273 kb on - strand, within PS417_14350 at 3140.351 kb on - strand at 3140.575 kb on + strand, within PS417_14355 at 3140.648 kb on + strand, within PS417_14355 at 3140.938 kb on + strand, within PS417_14355 at 3140.939 kb on - strand, within PS417_14355 at 3140.939 kb on - strand, within PS417_14355 at 3140.948 kb on - strand, within PS417_14355 at 3141.046 kb on - strand, within PS417_14355 at 3141.046 kb on - strand, within PS417_14355 at 3141.046 kb on - strand, within PS417_14355 at 3141.186 kb on + strand at 3141.187 kb on - strand at 3141.209 kb on + strand at 3141.209 kb on + strand at 3141.224 kb on - strand at 3141.232 kb on + strand at 3141.232 kb on + strand at 3141.233 kb on - strand at 3141.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 3,138,770 + -0.1 3,138,879 + PS417_14345 0.28 -0.6 3,138,879 + PS417_14345 0.28 -1.1 3,138,880 - PS417_14345 0.28 -1.6 3,138,922 + PS417_14345 0.33 -0.5 3,138,923 - PS417_14345 0.33 -1.7 3,138,923 - PS417_14345 0.33 -0.9 3,139,307 + PS417_14345 0.75 +1.5 3,139,308 - PS417_14345 0.75 -0.8 3,139,617 + -0.5 3,139,622 + -1.5 3,139,623 - +0.3 3,139,626 - -2.5 3,139,754 - PS417_14350 0.18 -1.8 3,139,820 - PS417_14350 0.26 -0.5 3,139,822 - PS417_14350 0.26 -0.6 3,139,822 - PS417_14350 0.26 -1.5 3,139,986 + PS417_14350 0.46 +1.1 3,140,119 + PS417_14350 0.62 -1.6 3,140,119 + PS417_14350 0.62 -0.5 3,140,167 + PS417_14350 0.68 -1.2 3,140,168 - PS417_14350 0.68 -2.3 3,140,272 + PS417_14350 0.80 -3.1 3,140,272 + PS417_14350 0.80 -2.4 3,140,273 - PS417_14350 0.81 -2.2 3,140,273 - PS417_14350 0.81 +1.5 3,140,351 - -0.1 3,140,575 + PS417_14355 0.15 +0.0 3,140,648 + PS417_14355 0.24 +0.5 3,140,938 + PS417_14355 0.62 -0.4 3,140,939 - PS417_14355 0.62 +1.1 3,140,939 - PS417_14355 0.62 -0.3 3,140,948 - PS417_14355 0.64 -0.4 3,141,046 - PS417_14355 0.76 -0.5 3,141,046 - PS417_14355 0.76 -0.2 3,141,046 - PS417_14355 0.76 -1.1 3,141,186 + +0.4 3,141,187 - +1.5 3,141,209 + -0.3 3,141,209 + +0.3 3,141,224 - +0.5 3,141,232 + -0.1 3,141,232 + +0.2 3,141,233 - +0.1 3,141,308 - +1.5
Or see this region's nucleotide sequence