Strain Fitness in Pseudomonas simiae WCS417 around PS417_14345

Experiment: Phosphomycin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14335 and PS417_14340 are separated by 122 nucleotidesPS417_14340 and PS417_14345 are separated by 338 nucleotidesPS417_14345 and PS417_14350 are separated by 75 nucleotidesPS417_14350 and PS417_14355 are separated by 30 nucleotides PS417_14335: PS417_14335 - lysine transporter LysE, at 3,137,352 to 3,137,960 _14335 PS417_14340: PS417_14340 - hypothetical protein, at 3,138,083 to 3,138,286 _14340 PS417_14345: PS417_14345 - LysR family transcriptional regulator, at 3,138,625 to 3,139,530 _14345 PS417_14350: PS417_14350 - multidrug DMT transporter permease, at 3,139,606 to 3,140,433 _14350 PS417_14355: PS417_14355 - sugar dehydrogenase, at 3,140,464 to 3,141,225 _14355 Position (kb) 3138 3139 3140Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3137.702 kb on - strand, within PS417_14335at 3137.711 kb on - strand, within PS417_14335at 3137.725 kb on + strand, within PS417_14335at 3137.740 kb on + strand, within PS417_14335at 3137.740 kb on + strand, within PS417_14335at 3137.741 kb on - strand, within PS417_14335at 3137.874 kb on + strand, within PS417_14335at 3137.875 kb on - strand, within PS417_14335at 3137.875 kb on - strand, within PS417_14335at 3137.960 kb on + strandat 3137.960 kb on + strandat 3137.961 kb on - strandat 3137.961 kb on - strandat 3137.984 kb on + strandat 3138.049 kb on + strandat 3138.049 kb on + strandat 3138.050 kb on - strandat 3138.050 kb on - strandat 3138.098 kb on + strandat 3138.099 kb on - strandat 3138.373 kb on + strandat 3138.373 kb on + strandat 3138.401 kb on - strandat 3138.477 kb on + strandat 3138.486 kb on + strandat 3138.770 kb on + strandat 3138.879 kb on + strand, within PS417_14345at 3138.879 kb on + strand, within PS417_14345at 3138.880 kb on - strand, within PS417_14345at 3138.922 kb on + strand, within PS417_14345at 3138.923 kb on - strand, within PS417_14345at 3138.923 kb on - strand, within PS417_14345at 3139.307 kb on + strand, within PS417_14345at 3139.308 kb on - strand, within PS417_14345at 3139.617 kb on + strandat 3139.622 kb on + strandat 3139.623 kb on - strandat 3139.626 kb on - strandat 3139.754 kb on - strand, within PS417_14350at 3139.820 kb on - strand, within PS417_14350at 3139.822 kb on - strand, within PS417_14350at 3139.822 kb on - strand, within PS417_14350at 3139.986 kb on + strand, within PS417_14350at 3140.119 kb on + strand, within PS417_14350at 3140.119 kb on + strand, within PS417_14350at 3140.167 kb on + strand, within PS417_14350at 3140.168 kb on - strand, within PS417_14350at 3140.272 kb on + strand, within PS417_14350at 3140.272 kb on + strand, within PS417_14350at 3140.273 kb on - strand, within PS417_14350at 3140.273 kb on - strand, within PS417_14350at 3140.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml
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3,137,702 - PS417_14335 0.57 +0.9
3,137,711 - PS417_14335 0.59 +0.2
3,137,725 + PS417_14335 0.61 +0.1
3,137,740 + PS417_14335 0.64 -0.3
3,137,740 + PS417_14335 0.64 +0.1
3,137,741 - PS417_14335 0.64 +0.7
3,137,874 + PS417_14335 0.86 +0.5
3,137,875 - PS417_14335 0.86 +1.4
3,137,875 - PS417_14335 0.86 +0.5
3,137,960 + +1.5
3,137,960 + +0.1
3,137,961 - +1.0
3,137,961 - +0.8
3,137,984 + +0.9
3,138,049 + +0.5
3,138,049 + +0.5
3,138,050 - -0.0
3,138,050 - -0.9
3,138,098 + +0.1
3,138,099 - +0.1
3,138,373 + +3.3
3,138,373 + +3.1
3,138,401 - +0.5
3,138,477 + +2.4
3,138,486 + +2.7
3,138,770 + -0.1
3,138,879 + PS417_14345 0.28 -0.6
3,138,879 + PS417_14345 0.28 -1.1
3,138,880 - PS417_14345 0.28 -1.6
3,138,922 + PS417_14345 0.33 -0.5
3,138,923 - PS417_14345 0.33 -1.7
3,138,923 - PS417_14345 0.33 -0.9
3,139,307 + PS417_14345 0.75 +1.5
3,139,308 - PS417_14345 0.75 -0.8
3,139,617 + -0.5
3,139,622 + -1.5
3,139,623 - +0.3
3,139,626 - -2.5
3,139,754 - PS417_14350 0.18 -1.8
3,139,820 - PS417_14350 0.26 -0.5
3,139,822 - PS417_14350 0.26 -0.6
3,139,822 - PS417_14350 0.26 -1.5
3,139,986 + PS417_14350 0.46 +1.1
3,140,119 + PS417_14350 0.62 -1.6
3,140,119 + PS417_14350 0.62 -0.5
3,140,167 + PS417_14350 0.68 -1.2
3,140,168 - PS417_14350 0.68 -2.3
3,140,272 + PS417_14350 0.80 -3.1
3,140,272 + PS417_14350 0.80 -2.4
3,140,273 - PS417_14350 0.81 -2.2
3,140,273 - PS417_14350 0.81 +1.5
3,140,351 - -0.1

Or see this region's nucleotide sequence