Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13785 and PS417_13790 are separated by 413 nucleotides PS417_13790 and PS417_13795 overlap by 4 nucleotides
PS417_13785: PS417_13785 - hypothetical protein, at 3,027,769 to 3,028,593
_13785
PS417_13790: PS417_13790 - UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 3,029,007 to 3,030,041
_13790
PS417_13795: PS417_13795 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 3,030,038 to 3,032,029
_13795
Position (kb)
3029
3030
3031 Strain fitness (log2 ratio)
-2
-1
0
1 at 3028.322 kb on + strand, within PS417_13785 at 3028.573 kb on + strand at 3028.620 kb on - strand at 3028.684 kb on - strand at 3028.735 kb on + strand at 3028.739 kb on + strand at 3028.756 kb on + strand at 3028.794 kb on + strand at 3028.820 kb on + strand at 3028.843 kb on + strand at 3028.858 kb on + strand at 3028.859 kb on - strand at 3028.859 kb on - strand at 3028.878 kb on + strand at 3028.887 kb on + strand at 3028.892 kb on + strand at 3028.900 kb on - strand at 3029.021 kb on + strand at 3029.235 kb on + strand, within PS417_13790 at 3029.236 kb on - strand, within PS417_13790 at 3029.478 kb on + strand, within PS417_13790 at 3029.818 kb on + strand, within PS417_13790 at 3029.818 kb on + strand, within PS417_13790 at 3029.884 kb on - strand, within PS417_13790 at 3030.006 kb on - strand at 3030.006 kb on - strand at 3030.057 kb on + strand at 3030.065 kb on + strand at 3030.167 kb on + strand at 3030.167 kb on + strand at 3030.202 kb on + strand at 3030.276 kb on - strand, within PS417_13795 at 3030.276 kb on - strand, within PS417_13795 at 3030.374 kb on + strand, within PS417_13795 at 3030.632 kb on + strand, within PS417_13795
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 3,028,322 + PS417_13785 0.67 +0.4 3,028,573 + -1.2 3,028,620 - +0.1 3,028,684 - -1.6 3,028,735 + +0.0 3,028,739 + +0.2 3,028,756 + -0.6 3,028,794 + +0.4 3,028,820 + +0.2 3,028,843 + -0.8 3,028,858 + +0.2 3,028,859 - -2.4 3,028,859 - -1.6 3,028,878 + +1.0 3,028,887 + +0.8 3,028,892 + +0.9 3,028,900 - -1.3 3,029,021 + -2.4 3,029,235 + PS417_13790 0.22 +1.5 3,029,236 - PS417_13790 0.22 -0.7 3,029,478 + PS417_13790 0.46 -0.9 3,029,818 + PS417_13790 0.78 +1.1 3,029,818 + PS417_13790 0.78 -2.0 3,029,884 - PS417_13790 0.85 -0.8 3,030,006 - -1.6 3,030,006 - +0.4 3,030,057 + -1.4 3,030,065 + +0.2 3,030,167 + +0.3 3,030,167 + -0.9 3,030,202 + -1.2 3,030,276 - PS417_13795 0.12 +0.9 3,030,276 - PS417_13795 0.12 -1.0 3,030,374 + PS417_13795 0.17 -1.1 3,030,632 + PS417_13795 0.30 -0.9
Or see this region's nucleotide sequence