Strain Fitness in Pseudomonas simiae WCS417 around PS417_12580
Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.002 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,736,400 | + | -0.0 | |||
| 2,736,401 | - | -0.4 | |||
| 2,736,452 | + | +0.4 | |||
| 2,736,453 | - | -0.5 | |||
| 2,736,495 | + | -1.3 | |||
| 2,736,495 | + | -0.2 | |||
| 2,736,496 | - | -1.4 | |||
| 2,736,565 | + | +0.4 | |||
| 2,736,566 | - | +1.5 | |||
| 2,737,085 | + | +0.4 | |||
| 2,737,085 | + | +1.5 | |||
| 2,737,086 | - | -2.2 | |||
| 2,737,086 | - | -0.3 | |||
| 2,737,124 | - | -2.1 | |||
| 2,737,165 | - | -0.3 | |||
| 2,737,327 | - | PS417_12580 | 0.29 | +0.2 | |
| 2,737,377 | - | PS417_12580 | 0.37 | -0.0 | |
| 2,737,377 | - | PS417_12580 | 0.37 | -1.2 | |
| 2,737,377 | - | PS417_12580 | 0.37 | -0.6 | |
| 2,737,380 | - | PS417_12580 | 0.37 | -0.9 | |
| 2,737,392 | - | PS417_12580 | 0.39 | -0.7 | |
| 2,737,600 | + | PS417_12580 | 0.71 | -0.2 | |
| 2,737,649 | + | PS417_12580 | 0.79 | -1.4 | |
| 2,737,650 | - | PS417_12580 | 0.79 | -1.1 | |
| 2,737,650 | - | PS417_12580 | 0.79 | -0.9 | |
| 2,737,802 | + | +2.5 | |||
| 2,737,803 | - | -0.5 | |||
| 2,737,866 | - | +0.4 | |||
| 2,738,036 | - | +0.8 | |||
| 2,738,325 | - | PS417_12585 | 0.13 | -0.1 |
Or see this region's nucleotide sequence