Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12215 and PS417_12220 are separated by 98 nucleotides PS417_12220 and PS417_12225 are separated by 65 nucleotides PS417_12225 and PS417_12230 are separated by 30 nucleotides
PS417_12215: PS417_12215 - lytic transglycosylase, at 2,655,400 to 2,656,815
_12215
PS417_12220: PS417_12220 - hydroxyacylglutathione hydrolase, at 2,656,914 to 2,657,681
_12220
PS417_12225: PS417_12225 - SAM-dependent methyltransferase, at 2,657,747 to 2,658,505
_12225
PS417_12230: PS417_12230 - ribonuclease H, at 2,658,536 to 2,658,988
_12230
Position (kb)
2656
2657
2658 Strain fitness (log2 ratio)
-1
0
1
2 at 2656.028 kb on + strand, within PS417_12215 at 2656.080 kb on - strand, within PS417_12215 at 2656.185 kb on - strand, within PS417_12215 at 2656.289 kb on + strand, within PS417_12215 at 2656.289 kb on + strand, within PS417_12215 at 2656.289 kb on + strand, within PS417_12215 at 2656.346 kb on - strand, within PS417_12215 at 2656.370 kb on + strand, within PS417_12215 at 2656.385 kb on + strand, within PS417_12215 at 2656.458 kb on - strand, within PS417_12215 at 2656.458 kb on - strand, within PS417_12215 at 2656.587 kb on + strand, within PS417_12215 at 2656.894 kb on - strand at 2657.323 kb on + strand, within PS417_12220 at 2657.360 kb on + strand, within PS417_12220 at 2657.360 kb on + strand, within PS417_12220 at 2657.362 kb on + strand, within PS417_12220 at 2657.628 kb on + strand at 2657.642 kb on - strand at 2657.642 kb on - strand at 2657.676 kb on + strand at 2657.677 kb on - strand at 2657.677 kb on - strand at 2657.718 kb on + strand at 2657.718 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 2,656,028 + PS417_12215 0.44 +0.2 2,656,080 - PS417_12215 0.48 +0.5 2,656,185 - PS417_12215 0.55 -0.8 2,656,289 + PS417_12215 0.63 -0.5 2,656,289 + PS417_12215 0.63 +1.1 2,656,289 + PS417_12215 0.63 -0.6 2,656,346 - PS417_12215 0.67 +0.2 2,656,370 + PS417_12215 0.69 -0.2 2,656,385 + PS417_12215 0.70 +0.8 2,656,458 - PS417_12215 0.75 -0.8 2,656,458 - PS417_12215 0.75 +0.4 2,656,587 + PS417_12215 0.84 +0.8 2,656,894 - -0.1 2,657,323 + PS417_12220 0.53 +0.7 2,657,360 + PS417_12220 0.58 +1.1 2,657,360 + PS417_12220 0.58 +2.0 2,657,362 + PS417_12220 0.58 +1.1 2,657,628 + +1.5 2,657,642 - +0.8 2,657,642 - +0.5 2,657,676 + +0.9 2,657,677 - +0.3 2,657,677 - +0.3 2,657,718 + +1.3 2,657,718 + -0.6
Or see this region's nucleotide sequence