Strain Fitness in Pseudomonas simiae WCS417 around PS417_12050

Experiment: Phosphomycin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12045 and PS417_12050 are separated by 27 nucleotidesPS417_12050 and PS417_12055 are separated by 87 nucleotides PS417_12045: PS417_12045 - iditol 2-dehydrogenase, at 2,616,220 to 2,617,335 _12045 PS417_12050: PS417_12050 - short-chain dehydrogenase, at 2,617,363 to 2,618,118 _12050 PS417_12055: PS417_12055 - xylitol ABC transporter, substrate-binding component (from data), at 2,618,206 to 2,619,213 _12055 Position (kb) 2617 2618 2619Strain fitness (log2 ratio) -1 0 1at 2616.371 kb on + strand, within PS417_12045at 2616.371 kb on + strand, within PS417_12045at 2616.372 kb on - strand, within PS417_12045at 2616.544 kb on - strand, within PS417_12045at 2616.881 kb on + strand, within PS417_12045at 2616.881 kb on + strand, within PS417_12045at 2616.881 kb on + strand, within PS417_12045at 2617.365 kb on - strandat 2617.436 kb on + strandat 2617.436 kb on + strandat 2617.607 kb on - strand, within PS417_12050at 2617.646 kb on + strand, within PS417_12050at 2617.853 kb on + strand, within PS417_12050at 2617.854 kb on - strand, within PS417_12050at 2617.900 kb on + strand, within PS417_12050at 2617.901 kb on - strand, within PS417_12050at 2618.123 kb on - strandat 2618.232 kb on - strandat 2618.232 kb on - strandat 2618.279 kb on + strandat 2618.351 kb on + strand, within PS417_12055at 2618.352 kb on - strand, within PS417_12055at 2618.352 kb on - strand, within PS417_12055at 2618.831 kb on + strand, within PS417_12055at 2618.954 kb on + strand, within PS417_12055at 2619.005 kb on + strand, within PS417_12055at 2619.005 kb on + strand, within PS417_12055at 2619.006 kb on - strand, within PS417_12055at 2619.006 kb on - strand, within PS417_12055

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml
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2,616,371 + PS417_12045 0.14 +0.9
2,616,371 + PS417_12045 0.14 +0.3
2,616,372 - PS417_12045 0.14 +0.9
2,616,544 - PS417_12045 0.29 -1.1
2,616,881 + PS417_12045 0.59 +1.0
2,616,881 + PS417_12045 0.59 -0.2
2,616,881 + PS417_12045 0.59 -0.3
2,617,365 - -0.0
2,617,436 + -0.1
2,617,436 + +0.0
2,617,607 - PS417_12050 0.32 -1.3
2,617,646 + PS417_12050 0.37 -0.7
2,617,853 + PS417_12050 0.65 -0.9
2,617,854 - PS417_12050 0.65 +0.2
2,617,900 + PS417_12050 0.71 -0.5
2,617,901 - PS417_12050 0.71 -1.2
2,618,123 - +0.1
2,618,232 - -0.5
2,618,232 - -0.1
2,618,279 + +0.2
2,618,351 + PS417_12055 0.14 +0.1
2,618,352 - PS417_12055 0.14 +1.5
2,618,352 - PS417_12055 0.14 +0.1
2,618,831 + PS417_12055 0.62 +1.0
2,618,954 + PS417_12055 0.74 +0.5
2,619,005 + PS417_12055 0.79 -1.4
2,619,005 + PS417_12055 0.79 +0.1
2,619,006 - PS417_12055 0.79 +0.2
2,619,006 - PS417_12055 0.79 -0.5

Or see this region's nucleotide sequence