Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10000 and PS417_10005 overlap by 1 nucleotides PS417_10005 and PS417_10010 overlap by 4 nucleotides PS417_10010 and PS417_10015 overlap by 4 nucleotides PS417_10015 and PS417_10020 are separated by 262 nucleotides
PS417_10000: PS417_10000 - phage antirepressor protein, at 2,151,962 to 2,152,762
_10000
PS417_10005: PS417_10005 - Pyocin large subunit-like protein, at 2,152,762 to 2,153,556
_10005
PS417_10010: PS417_10010 - Replication protein P, at 2,153,553 to 2,154,266
_10010
PS417_10015: PS417_10015 - hypothetical protein, at 2,154,263 to 2,154,583
_10015
PS417_10020: PS417_10020 - hypothetical protein, at 2,154,846 to 2,155,361
_10020
Position (kb)
2153
2154
2155 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2152.581 kb on - strand, within PS417_10000 at 2152.581 kb on - strand, within PS417_10000 at 2152.581 kb on - strand, within PS417_10000 at 2152.581 kb on - strand, within PS417_10000 at 2152.638 kb on - strand, within PS417_10000 at 2152.702 kb on - strand at 2153.181 kb on + strand at 2153.213 kb on + strand, within PS417_10005 at 2153.213 kb on + strand, within PS417_10005 at 2153.301 kb on + strand, within PS417_10005 at 2153.302 kb on - strand, within PS417_10005 at 2153.302 kb on - strand, within PS417_10005 at 2153.471 kb on + strand at 2153.471 kb on + strand, within PS417_10005 at 2153.472 kb on - strand, within PS417_10005 at 2153.472 kb on - strand, within PS417_10005 at 2153.934 kb on + strand, within PS417_10010 at 2153.934 kb on + strand, within PS417_10010 at 2153.935 kb on - strand, within PS417_10010 at 2154.039 kb on + strand, within PS417_10010 at 2154.040 kb on - strand, within PS417_10010 at 2154.204 kb on - strand at 2154.537 kb on + strand, within PS417_10015 at 2154.594 kb on + strand at 2154.594 kb on + strand at 2154.682 kb on + strand at 2154.802 kb on + strand at 2154.883 kb on - strand at 2154.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 2,152,581 - PS417_10000 0.77 +0.0 2,152,581 - PS417_10000 0.77 -0.9 2,152,581 - PS417_10000 0.77 +1.1 2,152,581 - PS417_10000 0.77 +5.7 2,152,638 - PS417_10000 0.84 -2.0 2,152,702 - -0.8 2,153,181 + +0.7 2,153,213 + PS417_10005 0.57 +0.1 2,153,213 + PS417_10005 0.57 +0.3 2,153,301 + PS417_10005 0.68 -0.9 2,153,302 - PS417_10005 0.68 +0.3 2,153,302 - PS417_10005 0.68 +0.1 2,153,471 + +0.7 2,153,471 + PS417_10005 0.89 +1.3 2,153,472 - PS417_10005 0.89 -0.2 2,153,472 - PS417_10005 0.89 -0.1 2,153,934 + PS417_10010 0.53 -1.2 2,153,934 + PS417_10010 0.53 -0.8 2,153,935 - PS417_10010 0.54 -1.4 2,154,039 + PS417_10010 0.68 +0.1 2,154,040 - PS417_10010 0.68 +0.7 2,154,204 - -0.2 2,154,537 + PS417_10015 0.85 -0.2 2,154,594 + +0.7 2,154,594 + -0.5 2,154,682 + +0.1 2,154,802 + +0.3 2,154,883 - +0.7 2,154,883 - -1.1
Or see this region's nucleotide sequence