Strain Fitness in Pseudomonas simiae WCS417 around PS417_09465
Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.002 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,049,184 | + | PS417_09460 | 0.50 | +0.4 | |
2,049,184 | + | PS417_09460 | 0.50 | +0.1 | |
2,049,339 | + | +0.7 | |||
2,049,380 | - | PS417_09460 | 0.67 | -0.3 | |
2,049,674 | - | -0.2 | |||
2,049,716 | - | -1.3 | |||
2,049,849 | + | PS417_09465 | 0.14 | +0.5 | |
2,049,849 | + | PS417_09465 | 0.14 | -0.5 | |
2,049,850 | - | PS417_09465 | 0.15 | -1.1 | |
2,049,850 | - | PS417_09465 | 0.15 | -1.0 | |
2,049,850 | - | PS417_09465 | 0.15 | -1.5 | |
2,049,852 | + | PS417_09465 | 0.15 | -0.5 | |
2,049,853 | - | PS417_09465 | 0.15 | +0.7 | |
2,049,864 | + | PS417_09465 | 0.17 | -0.8 | |
2,049,899 | - | PS417_09465 | 0.23 | -0.7 | |
2,050,081 | + | PS417_09465 | 0.55 | -0.9 | |
2,050,251 | + | PS417_09465 | 0.86 | -2.4 | |
2,050,539 | + | -0.1 | |||
2,050,539 | + | -0.5 | |||
2,050,541 | + | -0.1 | |||
2,050,542 | - | -1.2 | |||
2,050,542 | - | -0.1 | |||
2,050,646 | + | -0.6 | |||
2,050,686 | - | +0.5 | |||
2,050,819 | - | PS417_09470 | 0.33 | -0.9 | |
2,050,888 | - | PS417_09470 | 0.58 | +0.1 | |
2,051,119 | - | +0.5 | |||
2,051,119 | - | -0.4 | |||
2,051,119 | - | -0.5 | |||
2,051,122 | + | -0.1 | |||
2,051,138 | + | -0.1 | |||
2,051,239 | + | +1.7 | |||
2,051,239 | + | -0.6 | |||
2,051,252 | + | +0.7 | |||
2,051,261 | + | -0.3 |
Or see this region's nucleotide sequence