Strain Fitness in Pseudomonas simiae WCS417 around PS417_00755
Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.002 mg/ml |
---|---|---|---|---|---|
remove | |||||
159,753 | + | PS417_00750 | 0.35 | -0.3 | |
159,754 | - | PS417_00750 | 0.35 | -1.0 | |
159,805 | - | PS417_00750 | 0.39 | -0.1 | |
159,805 | - | PS417_00750 | 0.39 | -0.8 | |
159,805 | - | PS417_00750 | 0.39 | +0.3 | |
159,805 | - | PS417_00750 | 0.39 | -0.8 | |
159,996 | - | PS417_00750 | 0.53 | +0.2 | |
160,095 | + | PS417_00750 | 0.61 | +1.2 | |
160,096 | - | PS417_00750 | 0.61 | -0.4 | |
160,284 | - | PS417_00750 | 0.75 | -0.0 | |
160,284 | - | PS417_00750 | 0.75 | +1.6 | |
160,284 | - | PS417_00750 | 0.75 | -0.6 | |
160,309 | - | PS417_00750 | 0.77 | -0.4 | |
160,651 | + | -0.0 | |||
160,651 | + | -0.0 | |||
160,651 | + | +1.7 | |||
160,652 | - | -0.1 | |||
160,652 | - | -0.5 | |||
160,652 | - | -1.2 | |||
160,805 | + | PS417_00755 | 0.37 | -3.0 | |
161,106 | - | -0.7 | |||
161,157 | + | -0.4 | |||
161,221 | + | -0.4 | |||
161,222 | - | -0.6 | |||
161,261 | - | +1.6 | |||
161,344 | - | +0.2 | |||
161,344 | - | +0.2 | |||
161,434 | + | -0.2 | |||
161,779 | - | PS417_00760 | 0.18 | +1.2 | |
161,779 | - | PS417_00760 | 0.18 | -0.4 | |
161,874 | + | PS417_00760 | 0.23 | -1.7 | |
161,874 | + | PS417_00760 | 0.23 | +0.4 |
Or see this region's nucleotide sequence