Experiment: Phosphomycin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07365 and PS417_07370 are separated by 100 nucleotides PS417_07370 and PS417_07375 are separated by 122 nucleotides PS417_07375 and PS417_07380 overlap by 4 nucleotides PS417_07380 and PS417_07385 are separated by 107 nucleotides
PS417_07365: PS417_07365 - glutamine synthetase, at 1,622,527 to 1,623,897
_07365
PS417_07370: PS417_07370 - SAM-dependent methyltransferase, at 1,623,998 to 1,624,597
_07370
PS417_07375: PS417_07375 - ribonuclease D, at 1,624,720 to 1,625,853
_07375
PS417_07380: PS417_07380 - hypothetical protein, at 1,625,850 to 1,626,143
_07380
PS417_07385: PS417_07385 - 2-hydroxyacid dehydrogenase, at 1,626,251 to 1,627,183
_07385
Position (kb)
1624
1625
1626 Strain fitness (log2 ratio)
-1
0
1
2 at 1623.811 kb on + strand at 1623.812 kb on - strand at 1623.880 kb on + strand at 1624.034 kb on + strand at 1624.035 kb on - strand at 1624.035 kb on - strand at 1624.574 kb on + strand at 1624.574 kb on + strand at 1624.575 kb on - strand at 1624.586 kb on - strand at 1624.586 kb on - strand at 1624.596 kb on - strand at 1624.614 kb on + strand at 1624.685 kb on + strand at 1624.685 kb on + strand at 1624.687 kb on + strand at 1624.687 kb on + strand at 1624.688 kb on - strand at 1624.688 kb on - strand at 1624.688 kb on - strand at 1624.688 kb on - strand at 1624.689 kb on + strand at 1624.689 kb on + strand at 1624.689 kb on + strand at 1624.689 kb on + strand at 1624.690 kb on - strand at 1624.690 kb on - strand at 1624.690 kb on - strand at 1624.690 kb on - strand at 1624.690 kb on - strand at 1624.690 kb on - strand at 1624.838 kb on - strand, within PS417_07375 at 1624.875 kb on - strand, within PS417_07375 at 1625.077 kb on + strand, within PS417_07375 at 1625.176 kb on + strand, within PS417_07375 at 1625.176 kb on + strand, within PS417_07375 at 1625.177 kb on - strand, within PS417_07375 at 1625.177 kb on - strand, within PS417_07375 at 1625.177 kb on - strand, within PS417_07375 at 1625.213 kb on - strand, within PS417_07375 at 1625.248 kb on + strand, within PS417_07375 at 1625.248 kb on + strand, within PS417_07375 at 1625.248 kb on + strand, within PS417_07375 at 1625.249 kb on - strand, within PS417_07375 at 1625.249 kb on - strand, within PS417_07375 at 1625.524 kb on - strand, within PS417_07375 at 1625.580 kb on - strand, within PS417_07375 at 1625.858 kb on + strand at 1625.898 kb on + strand, within PS417_07380 at 1625.899 kb on - strand, within PS417_07380 at 1625.899 kb on - strand, within PS417_07380 at 1625.899 kb on - strand, within PS417_07380 at 1625.904 kb on + strand, within PS417_07380 at 1625.904 kb on + strand, within PS417_07380 at 1625.905 kb on - strand, within PS417_07380 at 1625.905 kb on - strand, within PS417_07380 at 1625.905 kb on - strand, within PS417_07380 at 1625.905 kb on - strand, within PS417_07380 at 1625.993 kb on + strand, within PS417_07380 at 1625.994 kb on - strand, within PS417_07380 at 1625.994 kb on - strand, within PS417_07380 at 1626.186 kb on + strand at 1626.186 kb on + strand at 1626.187 kb on - strand at 1626.187 kb on - strand at 1626.188 kb on + strand at 1626.188 kb on + strand at 1626.189 kb on - strand at 1626.189 kb on - strand at 1626.206 kb on - strand at 1626.246 kb on + strand at 1626.246 kb on + strand at 1626.247 kb on - strand at 1626.247 kb on - strand at 1626.247 kb on - strand at 1626.247 kb on - strand at 1626.560 kb on + strand, within PS417_07385 at 1626.560 kb on + strand, within PS417_07385 at 1626.560 kb on + strand, within PS417_07385 at 1626.560 kb on + strand, within PS417_07385 at 1626.560 kb on + strand, within PS417_07385 at 1626.560 kb on + strand, within PS417_07385 at 1626.561 kb on - strand, within PS417_07385 at 1626.561 kb on - strand, within PS417_07385 at 1626.561 kb on - strand at 1626.561 kb on - strand, within PS417_07385 at 1626.821 kb on + strand, within PS417_07385 at 1626.822 kb on - strand, within PS417_07385
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.002 mg/ml remove 1,623,811 + -1.0 1,623,812 - -0.5 1,623,880 + -0.5 1,624,034 + +0.2 1,624,035 - +0.5 1,624,035 - +0.2 1,624,574 + -0.4 1,624,574 + -0.0 1,624,575 - +0.0 1,624,586 - -0.2 1,624,586 - -0.3 1,624,596 - -0.2 1,624,614 + +1.8 1,624,685 + -0.4 1,624,685 + +0.1 1,624,687 + +0.2 1,624,687 + -0.2 1,624,688 - -0.2 1,624,688 - +0.8 1,624,688 - +1.8 1,624,688 - -0.6 1,624,689 + +1.8 1,624,689 + -0.0 1,624,689 + -0.8 1,624,689 + +0.2 1,624,690 - +0.1 1,624,690 - -1.0 1,624,690 - -0.3 1,624,690 - -0.3 1,624,690 - +0.0 1,624,690 - +0.1 1,624,838 - PS417_07375 0.10 -0.4 1,624,875 - PS417_07375 0.14 -0.0 1,625,077 + PS417_07375 0.31 -0.6 1,625,176 + PS417_07375 0.40 +0.0 1,625,176 + PS417_07375 0.40 +1.1 1,625,177 - PS417_07375 0.40 -0.9 1,625,177 - PS417_07375 0.40 -1.2 1,625,177 - PS417_07375 0.40 -1.4 1,625,213 - PS417_07375 0.43 -0.8 1,625,248 + PS417_07375 0.47 +0.7 1,625,248 + PS417_07375 0.47 +0.1 1,625,248 + PS417_07375 0.47 -1.2 1,625,249 - PS417_07375 0.47 -0.1 1,625,249 - PS417_07375 0.47 +0.8 1,625,524 - PS417_07375 0.71 -0.6 1,625,580 - PS417_07375 0.76 -0.7 1,625,858 + +0.1 1,625,898 + PS417_07380 0.16 +1.6 1,625,899 - PS417_07380 0.17 +0.7 1,625,899 - PS417_07380 0.17 -0.8 1,625,899 - PS417_07380 0.17 -0.2 1,625,904 + PS417_07380 0.18 +0.5 1,625,904 + PS417_07380 0.18 +0.5 1,625,905 - PS417_07380 0.19 +1.5 1,625,905 - PS417_07380 0.19 +0.2 1,625,905 - PS417_07380 0.19 -0.1 1,625,905 - PS417_07380 0.19 +0.6 1,625,993 + PS417_07380 0.49 -0.2 1,625,994 - PS417_07380 0.49 -0.5 1,625,994 - PS417_07380 0.49 +0.6 1,626,186 + -0.1 1,626,186 + -0.1 1,626,187 - -1.4 1,626,187 - -0.9 1,626,188 + -0.1 1,626,188 + -0.0 1,626,189 - +0.9 1,626,189 - -0.2 1,626,206 - +0.4 1,626,246 + -0.5 1,626,246 + +0.9 1,626,247 - -0.2 1,626,247 - -0.4 1,626,247 - -0.4 1,626,247 - -0.9 1,626,560 + PS417_07385 0.33 -0.5 1,626,560 + PS417_07385 0.33 +0.4 1,626,560 + PS417_07385 0.33 +0.0 1,626,560 + PS417_07385 0.33 +0.0 1,626,560 + PS417_07385 0.33 -0.2 1,626,560 + PS417_07385 0.33 -0.8 1,626,561 - PS417_07385 0.33 +1.5 1,626,561 - PS417_07385 0.33 -0.6 1,626,561 - +0.8 1,626,561 - PS417_07385 0.33 +0.9 1,626,821 + PS417_07385 0.61 -0.3 1,626,822 - PS417_07385 0.61 -0.7
Or see this region's nucleotide sequence