Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01895 and PS417_01900 are separated by 88 nucleotides PS417_01900 and PS417_01905 are separated by 149 nucleotides
PS417_01895: PS417_01895 - poly(R)-hydroxyalkanoic acid synthase, at 418,453 to 420,135
_01895
PS417_01900: PS417_01900 - poly(3-hydroxyalkanoate) depolymerase, at 420,224 to 421,069
_01900
PS417_01905: PS417_01905 - poly(R)-hydroxyalkanoic acid synthase, at 421,219 to 422,898
_01905
Position (kb) 420
421
422 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 419.327 kb on + strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.356 kb on + strand at 419.356 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.450 kb on + strand, within PS417_01895 at 419.451 kb on - strand, within PS417_01895 at 419.451 kb on - strand, within PS417_01895 at 419.453 kb on + strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.495 kb on + strand, within PS417_01895 at 419.519 kb on + strand, within PS417_01895 at 419.519 kb on + strand, within PS417_01895 at 419.520 kb on - strand, within PS417_01895 at 419.846 kb on + strand, within PS417_01895 at 419.846 kb on + strand, within PS417_01895 at 419.847 kb on - strand, within PS417_01895 at 420.188 kb on + strand at 420.225 kb on + strand at 420.259 kb on + strand at 420.260 kb on - strand at 420.499 kb on - strand, within PS417_01900 at 420.622 kb on - strand, within PS417_01900 at 420.673 kb on + strand, within PS417_01900 at 420.793 kb on - strand, within PS417_01900 at 420.802 kb on - strand, within PS417_01900 at 421.046 kb on - strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.272 kb on + strand at 421.275 kb on + strand at 421.276 kb on - strand at 421.279 kb on + strand at 421.279 kb on + strand at 421.280 kb on - strand at 421.280 kb on - strand at 421.282 kb on + strand at 421.481 kb on - strand, within PS417_01905 at 421.481 kb on - strand, within PS417_01905 at 421.481 kb on - strand, within PS417_01905 at 421.568 kb on + strand at 421.568 kb on + strand, within PS417_01905 at 421.751 kb on + strand, within PS417_01905 at 421.755 kb on + strand, within PS417_01905 at 421.755 kb on + strand, within PS417_01905 at 421.756 kb on - strand, within PS417_01905 at 421.756 kb on - strand, within PS417_01905 at 421.767 kb on - strand, within PS417_01905 at 421.974 kb on - strand, within PS417_01905
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.001 mg/ml remove 419,327 + PS417_01895 0.52 -0.7 419,328 - PS417_01895 0.52 -2.6 419,328 - PS417_01895 0.52 +2.9 419,328 - PS417_01895 0.52 +0.5 419,328 - PS417_01895 0.52 -0.5 419,356 + +1.3 419,356 + PS417_01895 0.54 -0.8 419,448 + PS417_01895 0.59 -0.3 419,448 + PS417_01895 0.59 +1.3 419,448 + PS417_01895 0.59 -0.1 419,450 + PS417_01895 0.59 -0.4 419,451 - PS417_01895 0.59 +0.2 419,451 - PS417_01895 0.59 -0.1 419,453 + PS417_01895 0.59 +0.1 419,454 - PS417_01895 0.59 -0.4 419,454 - PS417_01895 0.59 -0.7 419,454 - PS417_01895 0.59 -0.5 419,495 + PS417_01895 0.62 -2.5 419,519 + PS417_01895 0.63 -2.1 419,519 + PS417_01895 0.63 +1.4 419,520 - PS417_01895 0.63 -0.5 419,846 + PS417_01895 0.83 -2.3 419,846 + PS417_01895 0.83 +0.5 419,847 - PS417_01895 0.83 -0.6 420,188 + -0.8 420,225 + -0.4 420,259 + +0.1 420,260 - +0.2 420,499 - PS417_01900 0.33 -0.7 420,622 - PS417_01900 0.47 -1.3 420,673 + PS417_01900 0.53 -1.1 420,793 - PS417_01900 0.67 -0.3 420,802 - PS417_01900 0.68 +1.1 421,046 - -0.9 421,094 + -0.2 421,094 + +0.9 421,094 + -0.7 421,094 + -0.6 421,095 - -0.3 421,095 - -0.3 421,095 - +0.4 421,095 - -0.5 421,095 - +0.4 421,095 - +0.1 421,095 - +0.1 421,235 + +2.6 421,235 + +0.4 421,235 + -0.7 421,235 + +0.3 421,235 + +1.0 421,236 - +2.3 421,236 - +1.3 421,236 - -1.3 421,236 - -0.3 421,236 - -0.0 421,236 - -0.5 421,272 + -0.4 421,275 + -0.2 421,276 - -0.7 421,279 + -0.0 421,279 + -0.4 421,280 - +2.6 421,280 - +0.4 421,282 + -0.3 421,481 - PS417_01905 0.16 -0.0 421,481 - PS417_01905 0.16 -0.9 421,481 - PS417_01905 0.16 +1.6 421,568 + +1.3 421,568 + PS417_01905 0.21 -1.0 421,751 + PS417_01905 0.32 +0.5 421,755 + PS417_01905 0.32 -0.0 421,755 + PS417_01905 0.32 -0.5 421,756 - PS417_01905 0.32 -1.5 421,756 - PS417_01905 0.32 -0.7 421,767 - PS417_01905 0.33 +1.5 421,974 - PS417_01905 0.45 -0.7
Or see this region's nucleotide sequence