Strain Fitness in Pseudomonas simiae WCS417 around PS417_17110
Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,735,493 | + | PS417_17100 | 0.31 | -0.7 | |
3,735,494 | - | PS417_17100 | 0.31 | -0.1 | |
3,735,617 | + | PS417_17100 | 0.53 | +1.4 | |
3,735,846 | + | -0.2 | |||
3,735,847 | - | -0.0 | |||
3,735,861 | + | -0.9 | |||
3,735,861 | + | -1.4 | |||
3,735,861 | + | +1.8 | |||
3,735,922 | + | -0.7 | |||
3,735,947 | + | PS417_17105 | 0.11 | -0.5 | |
3,735,947 | + | PS417_17105 | 0.11 | +0.1 | |
3,736,030 | + | PS417_17105 | 0.26 | -0.2 | |
3,736,030 | + | PS417_17105 | 0.26 | -0.2 | |
3,736,476 | - | -1.0 | |||
3,736,503 | + | PS417_17110 | 0.15 | -0.7 | |
3,736,593 | + | PS417_17110 | 0.32 | -0.6 | |
3,736,593 | + | PS417_17110 | 0.32 | -1.2 | |
3,736,594 | - | -0.8 | |||
3,736,594 | - | PS417_17110 | 0.32 | -1.2 | |
3,736,639 | - | PS417_17110 | 0.41 | -0.5 | |
3,736,865 | - | PS417_17110 | 0.84 | -1.3 | |
3,736,894 | - | PS417_17110 | 0.90 | -0.9 | |
3,736,931 | + | +1.0 | |||
3,736,965 | - | -1.7 | |||
3,736,965 | - | -0.0 | |||
3,736,983 | + | -0.3 | |||
3,736,984 | - | +0.9 | |||
3,736,992 | - | -0.2 | |||
3,737,074 | + | -0.5 | |||
3,737,122 | - | -0.0 | |||
3,737,244 | + | +0.6 | |||
3,737,244 | + | -0.1 | |||
3,737,245 | - | +0.2 | |||
3,737,455 | - | PS417_17115 | 0.29 | +1.8 | |
3,737,636 | - | PS417_17115 | 0.46 | -0.3 | |
3,737,669 | - | PS417_17115 | 0.49 | -0.0 |
Or see this region's nucleotide sequence