Strain Fitness in Pseudomonas simiae WCS417 around PS417_15090
Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,299,335 | + | -0.8 | |||
3,299,335 | + | -3.4 | |||
3,299,336 | - | +0.7 | |||
3,299,402 | - | PS417_15085 | 0.12 | -0.3 | |
3,299,537 | + | PS417_15085 | 0.26 | -1.2 | |
3,299,690 | + | PS417_15085 | 0.42 | +1.7 | |
3,299,691 | - | PS417_15085 | 0.42 | +1.7 | |
3,299,753 | + | PS417_15085 | 0.48 | -1.9 | |
3,299,833 | + | PS417_15085 | 0.56 | -0.0 | |
3,299,939 | + | PS417_15085 | 0.68 | -0.5 | |
3,299,940 | - | PS417_15085 | 0.68 | -1.9 | |
3,299,940 | - | PS417_15085 | 0.68 | -1.3 | |
3,299,963 | + | PS417_15085 | 0.70 | -0.6 | |
3,299,963 | + | PS417_15085 | 0.70 | -2.4 | |
3,300,425 | - | PS417_15090 | 0.18 | -0.1 | |
3,301,039 | + | PS417_15090 | 0.84 | -0.6 | |
3,301,039 | + | PS417_15090 | 0.84 | -3.1 | |
3,301,492 | - | PS417_15095 | 0.62 | -1.7 | |
3,301,580 | - | PS417_15095 | 0.80 | -1.9 | |
3,301,586 | - | PS417_15095 | 0.81 | -2.0 | |
3,301,780 | + | -1.9 | |||
3,302,108 | - | PS417_15100 | 0.40 | -0.9 |
Or see this region's nucleotide sequence