Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15025 and PS417_15030 are separated by 9 nucleotides PS417_15030 and PS417_15035 are separated by 0 nucleotides PS417_15035 and PS417_15040 are separated by 154 nucleotides
PS417_15025: PS417_15025 - aminoglycoside phosphotransferase, at 3,284,521 to 3,285,588
_15025
PS417_15030: PS417_15030 - short-chain dehydrogenase, at 3,285,598 to 3,286,365
_15030
PS417_15035: PS417_15035 - alkylhydroperoxidase, at 3,286,366 to 3,286,809
_15035
PS417_15040: PS417_15040 - DNA-binding protein, at 3,286,964 to 3,288,397
_15040
Position (kb)
3286
3287 Strain fitness (log2 ratio)
-1
0
1 at 3285.382 kb on + strand, within PS417_15025 at 3285.427 kb on + strand, within PS417_15025 at 3285.430 kb on + strand, within PS417_15025 at 3285.430 kb on + strand, within PS417_15025 at 3285.430 kb on + strand, within PS417_15025 at 3285.436 kb on + strand, within PS417_15025 at 3285.436 kb on + strand, within PS417_15025 at 3285.436 kb on + strand at 3285.437 kb on - strand, within PS417_15025 at 3285.586 kb on + strand at 3285.597 kb on + strand at 3285.597 kb on + strand at 3285.598 kb on - strand at 3285.967 kb on + strand, within PS417_15030 at 3286.318 kb on + strand at 3286.589 kb on - strand, within PS417_15035 at 3286.787 kb on + strand at 3286.787 kb on + strand at 3286.852 kb on - strand at 3286.867 kb on + strand at 3286.868 kb on - strand at 3286.868 kb on - strand at 3286.875 kb on - strand at 3286.875 kb on - strand at 3286.877 kb on - strand at 3287.013 kb on + strand at 3287.014 kb on - strand at 3287.014 kb on - strand at 3287.014 kb on - strand at 3287.015 kb on + strand at 3287.016 kb on - strand at 3287.016 kb on - strand at 3287.016 kb on - strand at 3287.132 kb on + strand, within PS417_15040 at 3287.133 kb on - strand at 3287.148 kb on - strand, within PS417_15040 at 3287.148 kb on - strand, within PS417_15040 at 3287.424 kb on - strand, within PS417_15040 at 3287.717 kb on + strand, within PS417_15040 at 3287.717 kb on + strand, within PS417_15040
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.001 mg/ml remove 3,285,382 + PS417_15025 0.81 -0.1 3,285,427 + PS417_15025 0.85 +0.3 3,285,430 + PS417_15025 0.85 +1.7 3,285,430 + PS417_15025 0.85 -0.3 3,285,430 + PS417_15025 0.85 +0.1 3,285,436 + PS417_15025 0.86 +0.7 3,285,436 + PS417_15025 0.86 -0.2 3,285,436 + +0.7 3,285,437 - PS417_15025 0.86 -0.3 3,285,586 + -0.1 3,285,597 + +0.4 3,285,597 + -0.1 3,285,598 - -1.6 3,285,967 + PS417_15030 0.48 -0.0 3,286,318 + -0.5 3,286,589 - PS417_15035 0.50 -0.7 3,286,787 + -0.8 3,286,787 + -0.1 3,286,852 - -0.5 3,286,867 + -0.0 3,286,868 - -0.2 3,286,868 - -1.0 3,286,875 - +0.0 3,286,875 - -0.0 3,286,877 - +0.1 3,287,013 + +0.1 3,287,014 - -0.2 3,287,014 - -0.2 3,287,014 - +0.0 3,287,015 + -0.4 3,287,016 - -0.2 3,287,016 - +0.2 3,287,016 - +0.7 3,287,132 + PS417_15040 0.12 +0.1 3,287,133 - +0.7 3,287,148 - PS417_15040 0.13 -0.8 3,287,148 - PS417_15040 0.13 +0.1 3,287,424 - PS417_15040 0.32 +1.4 3,287,717 + PS417_15040 0.53 -0.1 3,287,717 + PS417_15040 0.53 -0.5
Or see this region's nucleotide sequence