Strain Fitness in Pseudomonas simiae WCS417 around PS417_12970
Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,833,929 | + | PS417_12965 | 0.40 | +0.7 | |
2,834,196 | + | PS417_12965 | 0.63 | -0.9 | |
2,834,429 | + | PS417_12965 | 0.83 | +0.2 | |
2,834,429 | + | +0.1 | |||
2,834,631 | + | +0.1 | |||
2,834,682 | - | -0.9 | |||
2,834,684 | - | -0.2 | |||
2,834,805 | + | PS417_12970 | 0.21 | +0.5 | |
2,834,806 | - | PS417_12970 | 0.21 | -0.3 | |
2,834,825 | + | PS417_12970 | 0.24 | +0.7 | |
2,834,825 | + | PS417_12970 | 0.24 | -0.1 | |
2,834,826 | - | PS417_12970 | 0.25 | +1.1 | |
2,834,826 | - | PS417_12970 | 0.25 | +1.0 | |
2,835,004 | - | PS417_12970 | 0.55 | +0.0 | |
2,835,120 | - | PS417_12970 | 0.74 | +0.7 | |
2,835,155 | + | PS417_12970 | 0.80 | +3.2 | |
2,835,350 | + | PS417_12975 | 0.18 | -0.9 | |
2,835,466 | - | PS417_12975 | 0.44 | +0.9 | |
2,835,478 | + | PS417_12975 | 0.47 | +0.4 | |
2,835,479 | - | PS417_12975 | 0.47 | +0.8 | |
2,835,482 | + | PS417_12975 | 0.48 | +0.4 | |
2,835,483 | - | PS417_12975 | 0.48 | -0.2 | |
2,835,493 | + | PS417_12975 | 0.51 | -0.7 | |
2,835,494 | - | PS417_12975 | 0.51 | +0.1 | |
2,835,494 | - | PS417_12975 | 0.51 | +0.7 | |
2,836,110 | + | PS417_12980 | 0.85 | +0.1 |
Or see this region's nucleotide sequence