Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12370 and PS417_12375 overlap by 1 nucleotides PS417_12375 and PS417_12380 overlap by 4 nucleotides PS417_12380 and PS417_12385 are separated by 14 nucleotides PS417_12385 and PS417_12390 overlap by 4 nucleotides
PS417_12370: PS417_12370 - inorganic polyphosphate kinase, at 2,690,997 to 2,691,887
_12370
PS417_12375: PS417_12375 - serine/threonine protein phosphatase, at 2,691,887 to 2,692,858
_12375
PS417_12380: PS417_12380 - peptidase S54, at 2,692,855 to 2,693,724
_12380
PS417_12385: PS417_12385 - hypothetical protein, at 2,693,739 to 2,693,999
_12385
PS417_12390: PS417_12390 - hypothetical protein, at 2,693,996 to 2,694,826
_12390
Position (kb)
2692
2693
2694 Strain fitness (log2 ratio)
-1
0
1 at 2691.909 kb on - strand at 2692.438 kb on + strand, within PS417_12375 at 2692.438 kb on + strand, within PS417_12375 at 2692.760 kb on + strand, within PS417_12375 at 2692.871 kb on + strand at 2692.874 kb on + strand at 2692.874 kb on + strand at 2692.875 kb on - strand at 2692.926 kb on + strand at 2692.927 kb on - strand at 2693.015 kb on - strand, within PS417_12380 at 2693.142 kb on + strand, within PS417_12380 at 2693.142 kb on + strand, within PS417_12380 at 2693.143 kb on - strand at 2693.145 kb on + strand, within PS417_12380 at 2693.145 kb on + strand, within PS417_12380 at 2693.145 kb on + strand, within PS417_12380 at 2693.146 kb on - strand, within PS417_12380 at 2693.146 kb on - strand, within PS417_12380 at 2693.432 kb on - strand, within PS417_12380 at 2693.440 kb on + strand, within PS417_12380 at 2693.738 kb on + strand at 2693.739 kb on - strand at 2693.784 kb on + strand, within PS417_12385 at 2694.195 kb on - strand, within PS417_12390 at 2694.264 kb on - strand, within PS417_12390 at 2694.678 kb on - strand, within PS417_12390
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.001 mg/ml remove 2,691,909 - -1.6 2,692,438 + PS417_12375 0.57 +1.0 2,692,438 + PS417_12375 0.57 +0.3 2,692,760 + PS417_12375 0.90 -1.1 2,692,871 + -0.8 2,692,874 + -0.3 2,692,874 + -0.6 2,692,875 - -0.7 2,692,926 + -0.1 2,692,927 - -0.8 2,693,015 - PS417_12380 0.18 +0.7 2,693,142 + PS417_12380 0.33 +0.1 2,693,142 + PS417_12380 0.33 -1.5 2,693,143 - -0.7 2,693,145 + PS417_12380 0.33 -0.6 2,693,145 + PS417_12380 0.33 -0.6 2,693,145 + PS417_12380 0.33 +0.1 2,693,146 - PS417_12380 0.33 -1.7 2,693,146 - PS417_12380 0.33 -0.9 2,693,432 - PS417_12380 0.66 -0.1 2,693,440 + PS417_12380 0.67 +1.3 2,693,738 + +0.3 2,693,739 - +0.9 2,693,784 + PS417_12385 0.17 -0.7 2,694,195 - PS417_12390 0.24 +1.7 2,694,264 - PS417_12390 0.32 -0.9 2,694,678 - PS417_12390 0.82 +0.3
Or see this region's nucleotide sequence